barSeed - Barley Seed Development Database

Probe ABC04586

Source Contig ABC04586

barSeed

Links

Affymetrix Source Sequence (2148 bp)

>ABC04586 2148
GTCACCGCACCACCACCAGTCGCCATGGGACCCACTGGTCAGCCTCGAGCCCTCTTGCTT
CTGCTCCTCGCCGCCGCTGCCGCCGCCGCCGCCGCGCCGGAGCACGAGGCCTTCCTCCGC
CTCCCCTCCTCGGCGCGTTCCCTCGCCCCGAAGACCCCCCGCTCCGCCGGCGCCGACCTC
ATCCGCGCTCTCAACCTCCACCCCCGCGACGCCTTCCCCCGCCGCCCCGGCGGCGTCGGC
AGCGGCGACGCTCTCCCGGCGGGAACCATCGTCGAGAGGCCGATCCGCCTCGCGTCCCTG
GTCGCCGGAGACGACGGCGGCGGCAACACGTCGGTGAGCAACCTCGGGCACCACGCCGGG
TACTACCGCCTCCCCACCACCCACGACGCCAGGCTCTTCTACTTCTTCTTCGAATCCAGG
CGGCACAAGAAGGAGGACCCCGTGGTGATCTGGCTGACGGGTGGGCCCGGCTGCAGCAGC
GAGCTTGCCCTCTTCTACGAGAATGGCCCCTTCCACATCGCGGACAACATGTCGCTGCTC
TGGAATGAGTTTGGCTGGGATCAGGAGTCGAATCTTATCTATGTTGATCAGCCAACTGGG
ACTGGGTTCAGCTACAGCTCTGATTCGCACGATACCCGCCATAATGAAGCGGGCGTCAGC
AACGACCTATATGACTTCCTGCAGGCCTTCTTCAAGGAGCACCCGGAGTATGTTGAAAAC
GATTTCTATATAACTGGGGAGTCATATGCTGGGCACTACATTCCTGCCTTTGCAACTAGG
GTGTACAAGGGGAACAAGAACAATGAGGGCATTCACATCAATTTGAAGGGTTTTGCGATT
GGTAATGGACTTACAGATCCAGCGATACAGTATAAGGCATACACCGATTATGCATTGGAT
ATGGGTTTAATCACACAGTCAGAATTTAACAAGATCAATAAAGTTGTTCCTGTTTGTGAA
TTTGCTGTCAAGCTTTGTGGTACCTCTGGCACTGTATCTTGCCTTGCTGCCTATTTTGTA
TGCAATACAATATTCAGTTCCATCAGGTTGATAATCGGGAACAAAAATTATTATGACATC
AGGAAGCCATGTGTGGGGAGCCTATGCTATGATTTTTCTAATTTGGAGAAGTTTCTCAAT
TTGAAATCTGTCAGACAGAGCCTAGGCGTTGGAGACATAGAGTTCGTCTCCTGCAGCCCA
ACTGTCTATCAGGCTATGCTCTTAGATTGGATGAGGAACCTTGAAGTTGGGATCCCTGAA
CTCCTTGAGAACGACATCAAAGTGCTGATTTATGCTGGAGAGTATGATCTCATATGCAAC
TGGCTAGGGAACTCAAGATGGGTAGACTCTATGGAATGGTCTGGAAAGAAAGCTTTCGTG
TCCTCAACTGAGAAACCCTTCACAGTTGATGGAAAAGAAACCGGCGTTCTGAAAAGCCAC
GGCCCTTTGAGTTTCTTGAAGGTCCACGACTCCGGTCACATGGTTCCCATGGATCAACCA
AAGGCCGCGTTGGAGATGCTCAAGAGGTGGATTTCAGGAAACCTTTCAGACGCCTCCTCG
AGCTCTCAGAGGCTCGACTTTGCCATATGATCCATCCTTGCGCTGGCTACTAGTGTAATG
TATCTGGTGTGCGCTCACATGCCTTGGGATGATCTTAGGTGATGGGAAGCTCGTCGGCGA
CCGTACATATGCTATTTCTCTTGTACGGTGCTCGAGGTTGGAGTGTGTAATAAAAGGCTT
TCAGAGGATTGCTGGGACAATACGAATGTATCACGAAGATTATCCCCTTTGATTCATATG
TGGACTACGTTAAAAAAAAAAAAAAAAAACAACTTGTCTCAGTTACCTGTAGTGTATGTA
AAGCATGTTGTAAAGCTTCTGGCATCACGAAGCGTGGCTCCGGCGGGGAGCCCTGCAGAT
GCCGAGATGAGGACATCTGATACGTTCATGCGTGTGCTGTTGGCTAGCTGAAGAAGTTTG
CAGCAGGGTTGGGGGTGTGCCTCGTGCCTGCCCGGTTTCCTCTGTCGGGGGAGGGGGGAA
AGAAGCACGGAAGGTGCCTCCAGATTTGTACAAAGTCTCAGTAATTTCTATCGTATCATA
AATTTACCTTGAGGGTGACACATTTCTCTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_80738.1	886	0.0	1 - 886	99	883 / 886	None	ABC04586
MLOC_35670.1	868	0.0	267 - 868	99	601 / 602	None	ABC00600 ABC00682 ABC04586
MLOC_2158.1	513	0.0	3 - 510	97	492 / 508	None	ABC04586
MLOC_39822.1	425	0.0	1 - 425	97	412 / 425	None	ABC04586
MLOC_48625.2	359	4e-170	2 - 359	97	348 / 359	None	ABC04586
MLOC_77869.2	1992	2e-164	489 - 1522	77	809 / 1049	None	ABC00600 ABC00682 ABC00865 ABC04586 ABC31936
AK362386	1925	7e-163	439 - 1472	77	808 / 1049	None	ABC00600 ABC00682 ABC00865 ABC04586 ABC31936
MLOC_77869.1	1995	1e-161	489 - 1525	77	810 / 1052	None	ABC00600 ABC00682 ABC00865 ABC04586 ABC31936
AK355741	2095	1e-156	1733 - 2033	100	301 / 301	CUST_10013_PI390587928 CUST_34530_PI390587928	ABC04584 ABC04585 ABC04586
MLOC_25487.2	655	1e-146	1 - 334	95	317 / 334	None	ABC00682 ABC04586
MLOC_77869.3	2098	1e-131	871 - 1572	79	562 / 711	None	ABC00600 ABC00682 ABC00865 ABC04586 ABC31936
MLOC_48625.1	382	1e-125	2 - 270	97	262 / 270	None	ABC04586
MLOC_73924.1	2041	2e-114	1817 - 2041	100	225 / 225	CUST_34530_PI390587928	ABC04584 ABC04585 ABC04586
MLOC_73924.2	1837	5e-110	1621 - 1837	100	217 / 217	CUST_34530_PI390587928	ABC04584 ABC04585 ABC04586
MLOC_46803.1	470	6e-89	1 - 203	96	195 / 203	None	ABC04586
MLOC_25487.1	759	1e-61	279 - 441	93	152 / 163	None	ABC04586
MLOC_73924.3	1825	5e-75	1672 - 1825	100	154 / 154	CUST_34530_PI390587928	ABC04584 ABC04585 ABC04586
MLOC_42415.1	202	7e-64	1 - 158	95	150 / 158	None	ABC04586
MLOC_41917.1	188	2e-58	4 - 145	96	136 / 142	None	ABC04586
AK356232	6072	5e-55	285 - 435	93	141 / 152	None	ABC04586
MLOC_54962.8	2917	5e-55	1786 - 1936	93	141 / 152	None	ABC04586
MLOC_54962.2	4439	5e-55	3312 - 3462	93	141 / 152	None	ABC04586
MLOC_54962.4	5743	5e-55	4681 - 4831	93	141 / 152	None	ABC04586
MLOC_54962.9	2334	5e-55	1416 - 1566	93	141 / 152	None	ABC04586
MLOC_54962.12	2189	5e-55	1685 - 1835	93	141 / 152	None	ABC04586
MLOC_54962.7	2760	5e-55	1702 - 1852	93	141 / 152	None	ABC04586