barSeed - Barley Seed Development Database

Probe CUST_3448_PI390587928

Source Contig U35_11844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3448_PI390587928	Hv_44K_v2	AGGAGGCCTTGTGGTTCTACCGCTACCTGTCCATCATCTACGACCACGTCACCAACTTGG	130	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14712.1	1181	2e-24	139 - 198	100	60 / 60	plus	ABC02893 ABC41141
JLOC1	JLOC1_10046.1	1392	8e-25	144 - 203	100	60 / 60	plus
Harvest21	ABC25595	506	3e-25	131 - 190	100	60 / 60	plus
Harvest35	U35_11844	507	3e-25	131 - 190	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_11844 507 Hv_44K_v2
CAGCAGGCCCACAGCAGCGTACCATTCTCGTGTTCATCCATGTCAGACTCGTCGGCGACG
ACAATGCGGAGGTCGTCCTCATCGAAGGCGGCACGGCGTGTCTGGGCACCGCGCTTCATC
CAACACAAGAAGGAGGCCTTGTGGTTCTACCGCTACCTGTCCATCATCTACGACCACGTC
ACCAACTTGGCCCCCTGGACCAAGGAGATGCGCGATGACGCGCTCAAGACCGCCGACCTC
CACAGCAGCAAGCTCAAGGTTGTCGACGTCGGCGGTGGCACCGGGTTTACCACGCTCGGC
ATCGTCAAGCATGTGGATCCCGAGAACGTCACGCTGCTCGACCTGTCCCCGCATCAGCTC
GACAAGGCAAGGCAGAAGGAGGCGCTCAACGGGGTGAATATCATGGAGGGCGACGCCGAG
GACCTCCCATTCCCTACCGACACCTTCGACCGATACGTCTCCGCCGGCAGCATTGAGTAC
TGGCCAGATCCCCAGCGAGGGATCAAG

Homology of Contig U35_11844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42090.3	320	7e-70	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01640.1	351	4e-73
Arabidopsis v10	AT3G63410.1	338	2e-56	\| Symbols: APG1, VTE3, IEP37, E37 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:23415816-23417002 REVERSE LENGTH=338