barSeed - Barley Seed Development Database

Probe CUST_34461_PI390587928

Source Contig U35_46984

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34461_PI390587928	Hv_44K_v2	AAGAATTTCGTCGTTGCTGATGCGGCATCACATGCCAATGAAAACTTTTATTGGGATAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64727.3	2238	2e-23	2163 - 2220	100	58 / 58	plus	ABC05305 ABC47711
JLOC1	JLOC1_42528.1	2373	1e-23	2188 - 2245	100	58 / 58	plus
Harvest21	ABC47711	504	3e-25	15 - 74	100	60 / 60	minus	ABC47711
Harvest35	U35_46984	504	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (504 bp)

>U35_46984 504 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCCCAATAAAAGTTTTCATTGGCATGTGATGCCGCATCAGCA
ACGACGAAATTCTTTACAAGGAGGGTCTTCCATTCCATGACCACCAAAGTGGTGAGAAAA
TATACACCAAAATTTAATACAAGCATGAGCTATACAAGAATTGATCAAGCGGCCAACGCA
AGGGAGATGGCGGGACAAACCTGGCATTATCATTTGTGACGCAAGGAAATTGAACTTCAC
AACACGCAGTATGTAACTCTGGAAACTGGGTTTGGCATTGCGCCCAACGTGTATGTAACT
GTGACTGTACGGTTGTGAAGCTATAGAAGTTGCGCAGTTCCAAACGGGTTGGCTTGTGCG
TACATTCCATTTCCATTTGCTGCCGGGAAAGGGCCGAAGCCGGCATCGAGGAAGGGGTTT
GGCACAGGCATTGTGCCCGCATGCTGTGGGTGCGATGGCGGTCCGAAGGGATTTGGCTGC
ATCTGCTGGGGCTGCTGTGCCATG

Homology of Contig U35_46984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None