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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34460_PI390587928Hv_44K_v2CGTATGGTTCCAATTAAGGATCCCTTGGAGTTTCCTGAGAGGCTTCTTCTTACATACAAA550GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64727.713752e-24317 - 37610060 / 60plus ABC47711
MLOCMLOC_64727.518882e-24850 - 90910060 / 60plus ABC05305 ABC47711
MLOCMLOC_64727.322382e-241155 - 121410060 / 60plus ABC05305 ABC47711
MLOCMLOC_64727.613962e-24411 - 47010060 / 60plus ABC47711
JLOC1JLOC1_42528.123738e-251180 - 123910060 / 60plus
Harvest21ABC477126133e-25551 - 61010060 / 60plus
Harvest35U35_469856133e-25551 - 61010060 / 60plus



Contig Sequence (613 bp)

>U35_46985 613 Hv_44K_v2
TTCCATACCTATCGCTTGGGACTATTCTTCATGGGTTCGCACATATGGTTTATTTTTGGA
GGAAAGACTGCAATGCTTCAGGATCTTGAAGTATGATATTGAAGCTGAGCGTTTGCCCAA
GCAAGGTCAAGGGCCTGAAAAGGCGCACAGTCAAACTAGAGAATTAGATTCTCAGGCCTT
GCTGGAGCAGATGCCGGCACTACAACAGTTACTATATCGACTCATTGGATGCCGGCCAGA
AGGTGCTGCGAATAACAACTATTTGGTGCAATATGCTCTAGCCCTTGTCCTTAAAGAAAG
CTTCAAAATTTATTGCGCGATAAACGACGGAATTATCAACCTTGTTGATAAGTTTTTCGA
AATGCCAAGGCACGAAGCACTTAAAGCCCTTGAAATATACAGGAGGGCTGGCCAACAGGC
TGGAAATCTATCTGATTTTTATGAAAATTGCCGGGGATTAGAACTCGCAAGAAATTTCCA
GTTTCCCACTTTGAGGGAGCCACCACAGACATTCCTTTCAACCATGGAAGAGTACGTGAA
GGAGGCTCCACGTATGGTTCCAATTAAGGATCCCTTGGAGTTTCCTGAGAGGCTTCTTCT
TACATACAAACCG



Homology of Contig U35_46985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g50010.15697e-134protein|clathrin assembly protein, putative, expressed
Brachypodium v1_2Bradi2g47280.15683e-129
Arabidopsis v10AT2G01600.15718e-106ENTH/ANTH/VHS superfamily protein | chr2:268975-272356 FORWARD LENGTH=571