barSeed - Barley Seed Development Database

Probe CUST_34439_PI390587928

Source Contig U35_46994

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34439_PI390587928	Hv_44K_v2	CACTGATACACTCGTACATTGGTTATTCAAAACTAGTTTCGTGATGCTGTAAGATTGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76813.1	1780	2e-23	1699 - 1756	100	58 / 58	plus	ABC03332 ABC47740
JLOC1	JLOC1_51232.1	1982	1e-23	1700 - 1757	100	58 / 58	plus
Harvest21	ABC47740	518	3e-25	15 - 74	100	60 / 60	minus	ABC47740
Harvest35	U35_46994	518	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (518 bp)

>U35_46994 518 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAATCTTACAGCATCACGAAACTAGTTTTGAATAACCAATGTA
CGAGTGTATCAGTGTGCTCGTCTATGCCGTTTACTCGGTATGTCAAATAGTAAAGAACAC
TAGAATTGGGGATAGCGCGGTCCATTCATGCATCTTATTGCGAGGGCACGGGCACCTTAT
TGTGAAGGACTAGCTACCATTTAAATCATGCATCTTGGAGCCGCTTGGTGGGTGACACAG
CTTCTATAGCTTCTCCGAGAGGCCATGCGGCTTCAATGAAATATTCGCCGTGCTTCACCT
TCTCTACCACTGTGATCACCTTCGTCGGTTCCAAACCGAATCCATACACGAGCAGGGAGT
ACTGGTAGACGAGGTCCATACAAAGGTAGGGCACGTCGGTGGCTCGGGCCCTTGGGTACA
AAGCCTTTGCTTCCTCCAAGCTCAGCCGGCAAATCTTCTCGGCGGCGGCCCTGTATGCTG
CCGGGGTAGTCTTCCCGCTGGTAGAGTCGCTGTCGATC

Homology of Contig U35_46994 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None