- Probe CUST_34432_PI390587928
- Source Contig U35_46998
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34432_PI390587928 | Hv_44K_v2 | AGCTTGCCACACAAGTTTTGTGCTTTGTGTACATCAATTTAGTGGACTTATGTTGAGTTT | 3 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.609 | 1.651 | 1.175 | 0.793 | 0.292 | 0.372 |
| Raw | 1779.963 | 2778.971 | 1777.027 | 1873.056 | 242.393 | 336.933 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47746 | 567 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC38397 | 481 | 3e-25 | 222 - 281 | 100 | 60 / 60 | minus | ABC38397 |
| Harvest35 | U35_46998 | 567 | 3e-25 | 4 - 63 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_42623 | 481 | 3e-25 | 222 - 281 | 100 | 60 / 60 | minus |
Contig Sequence (567 bp)
>U35_46998 567 Hv_44K_v2 AGAAAACTCAACATAAGTCCACTAAATTGATGTACACAAAGCACAAAACTTGTGTGGCAA GCTTTGCAGTGTGTAGAAACGGGAGCACACTGTAATACACTGTATATCTCTGAATACACA CTTGACAATTCCAGCTCCCTTCCATCCTTGCCAGCACATCTAAGTAAATGATACATTGCT TTTGTGAGGTACAAACAGAATCAGCCTGATTAGAATGAATTGCGGTTGAAAATGACAAAA CTACTCAAAACTGGGGTGCTCAGACCTCAGAGACAAGAATCAAGAGCGATTAGCCTGGTA AAAATCGCCAGCGCTAAGAAAAACATGCTTCCCTAGCTGCAGATCAATTGGGGGATAGCC TTCGATGCACTTTACCGTAATCTTGCCATTTCCAGTCTGGAATTCGTTCTTCAATCTGGA AATGGACCTTGACAACAAATACACTCTTAACGCCTCAACATGGTCACTGTTACCTGAGGC ATAGGAAAGGAGATCAGCTGCCAGCACAGGCATGCATCTTGCAATGTAGATGACAAATGA CATGTCATGTACAGTATGAGACTCCTC
Homology of Contig U35_46998 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |