barSeed - Barley Seed Development Database

Probe CUST_34392_PI390587928

Source Contig U35_31050

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34392_PI390587928	Hv_44K_v2	TTTGGTGGGTGGTCTCATTGTTTACAGGTTGTGTGGTCTTGTCGCGGTTATAAACAGAGT	379	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.284	1.341	1.242	0.763	0.206	0.169
Raw	43695.367	70768.500	57812.133	54632.800	5372.227	4722.770

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53175.1	4997	2e-24	394 - 453	100	60 / 60	minus	ABC01424
MLOC	MLOC_53175.2	2765	2e-24	45 - 104	100	60 / 60	minus	ABC01424
JLOC1	JLOC1_34134.1	3439	8e-25	2681 - 2740	100	60 / 60	plus
Harvest21	ABC31193	439	3e-25	380 - 439	100	60 / 60	plus
Harvest21	ABC01424	2676	3e-25	2579 - 2638	100	60 / 60	plus	ABC01424
Harvest35	U35_31050	439	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_14375	2682	3e-25	2586 - 2645	100	60 / 60	plus

Contig Sequence (439 bp)

>U35_31050 439 Hv_44K_v2
CGACGAGAAGCTCCTCTCGGTCTTCCGCGAGGGCGTGACCTACGGGGCCGGCATTGGCCC
CGGCGTCTACGACATCCACTCCCCCAGGATCCCCTCCACGGAGGAGATTGCCGACCGCGT
CAACAAGATGCTCGCGGTGCTCGACACCAACATCCTCTGGGTGAAGCCCGCACCCAGCTC
GCCAGCACGAAGTGAGGAGCCATGAAATCGAACAGCCTGATGATACTACTACCTATTGTT
TTGTGGGGACAGAGCGCCAAACGAGCCGTTTGTTTCGAATAATCCGATTCTTTATCGTAC
CGCCCGAGTCTGGCTAGGGTTAGTCCTGCTGTTATGGTAAAACTGTTACATGTTGATGGC
ATACGTTGTATTCTATGTGTTTGGTGGGTGGTCTCATTGTTTACAGGTTGTGTGGTCTTG
TCGCGGTTATAAACAGAGT

Homology of Contig U35_31050 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None