barSeed - Barley Seed Development Database

Probe CUST_34314_PI390587928

Source Contig U35_3559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34314_PI390587928	Hv_44K_v2	GTGCAGTAGTATTATTTGTGAATAAATAGGTGATGTCGCCTAGATGGAATTCAAGTTTTC	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59654.2	920	2e-24	851 - 910	100	60 / 60	plus	ABC13949 ABC41354
MLOC	MLOC_59654.1	1605	2e-24	339 - 398	100	60 / 60	minus	ABC13949 ABC41354
JLOC1	JLOC1_38837.1	1537	8e-25	292 - 351	100	60 / 60	minus
Harvest21	ABC13949	553	3e-25	38 - 97	100	60 / 60	minus	ABC13949
Harvest35	U35_3559	614	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_3559 614 Hv_44K_v2
GTTCGGCGGGACCAANCCGGTCGAGGGGGAGCACCCGGCCGCGTGCATGGTCACCGGGAT
GCTCTGGTCCTACGCGTGCCCGGGCGCGGTGGGCGGCGCCGACGACCCGAGGATCAACCC
GCTGGCGCCGGGCGCGCCGGCGCTGGAGAGGCTCGGCTGCGTGAGGATGCTCGTGACCGC
CGGGCTGGCGGACGGGCTCGCCGCGCGGAACCGCGCGTACCACGACGCCGTGGCCGGCAG
CGCGTGGGGCGGCACCGCGGCGTGGCACGGGTCCGATGGGGAGGGTCACGTGTTCTTCCT
CGAGAAGCCCGGGTGCGACAACGCCAAGCAGCTCATGGACCGCGTCGTCGCCTTCATAGC
CGGTGCCTGATAGAGAGTTGGTCTGCAGATCATCTCCATTGTCTTCGAGAGGAACCTGCT
CTGCATCACTGCTTGTTCGCTTACTGGGTGAATAAGGTGCAGTAGTATTATTTGTGAATA
AATAGGTGATGTCGCCTAGATGGAATTCAAGTTTTCTTGGAGTATCAATAAAAAAAAAAA
AAATTTGCACTCCGGGATTACAAGCATTTTTTTAGAATGATTATCACCATTTTCTGTCAA
AAAAAAAAAAAAAA

Homology of Contig U35_3559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28630.1	316	7e-58	protein\|gibberellin receptor, putative, expressed
Brachypodium v1_2	Bradi4g32300.1	407	8e-66
Arabidopsis v10	None