barSeed - Barley Seed Development Database

Probe CUST_34309_PI390587928

Source Contig U35_3564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34309_PI390587928	Hv_44K_v2	GTTGCTATTCATAATTCGTGTTTGTGATATGATTGAAGATTGACGGTACTATGCTTCTGT	969	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369817	1046	7e-23	961 - 1020	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.5	703	7e-23	615 - 674	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.6	813	7e-23	725 - 784	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.2	652	7e-23	564 - 623	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.3	762	7e-23	674 - 733	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.4	825	7e-23	737 - 796	98	59 / 60	plus	ABC08337
MLOC	MLOC_44746.1	938	7e-23	850 - 909	98	59 / 60	plus	ABC08337
JLOC1	JLOC1_29019.1	897	4e-23	564 - 623	98	59 / 60	plus
Harvest21	ABC08337	1094	3e-25	970 - 1029	100	60 / 60	plus	ABC08337
Harvest35	U35_3564	1094	3e-25	970 - 1029	100	60 / 60	plus

Contig Sequence (1094 bp)

>U35_3564 1094 Hv_44K_v2
GATTCCGTCCAGCCCACCACCCAAGGTCGCCGCGGATCTAGCCTTGCCGGAGAGGAGAGA
TGAAGATCACGGCGCTCGTCGTGCTGAAGCCGTCGGCCGGAGGCGCTGGGGGATCCTCGT
CGAGCGGCGGGCAGGGCGCCGAGGCGCTCGTGCTGGCCAACGCCACGGACGTCAGCCACT
TCGGCTTCTTCCAGCGCGGCGCCGCCCGCGAGTTCATCGTCTTCGTCGCCCGCACCGTCG
CCCAGCGCACCCAGCCCGGCCAGCGCCAGTCCGTCCAGCACGAAGAATACAAGGTTCACT
CACACAACAGAAATGGCCTCTGTGTGGTGGCTTTTATGGATGATCACTATCCTGTACGAA
GTGCATTTTCTCTTTTGAATAAGGTACTTGACGAATACCAGAAGGCTTTTGGGGATGCTT
GGAAAGCTGCGACAGCAGATTCCACTCAAGAGTGGCCTTTCCTGATGGACGCTTTGACAA
AATTTCAGGATCCTGCAGAGGCTGACAAGTTAACAAAAATCCAGAGGGACTTGGATGAAA
CAAAAATTATCCTGCATAAAACTATAGAGAATGTTCTTCAAAGAGGAGAGAGGTTGGATA
GCTTGGTTGAAAAAAGCTCAGACCTCAGTGCTGCTTCACAGATGTTCTACAAGCAGGCGA
AGAAAACAAACAGTTGTTGTACTATACTCTGAAGTTTGAACTGTGATCCTTCAGTCTCTC
TTGGAAGGCTCCAGAAAGAAAATCAATTGAATACCGTTGTGTTGTACCGTAAGCCGACTG
CTCATGAAAACGTGCCGGGATCAATACTGTAAATCTGTTATTCTTTGGTGACGCCTTCGA
ATAGCAACTAACACCACTTAGCAACGGCCAACATCATCGTCTTCCCTGCGTAGATTGTCG
ATATCTCTCAGTTATCAAGTATGTTGGAGCACCGTTGCTGCCCCTTAATTTATGTATGTT
GGAAAACTGGTTGCTATTCATAATTCGTGTTTGTGATATGATTGAAGATTGACGGTACTA
TGCTTCTGTTATTATATACCAGTTTATTTATGTTGAGAAAAAAAAAAAAAAAAATNGAGG
AGGGGCCCGGACCC

Homology of Contig U35_3564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g64650.2	217	8e-121	protein\|VAMP-like protein YKT62, putative, expressed
Brachypodium v1_2	Bradi2g56020.3	214	2e-124
Arabidopsis v10	AT5G58060.2	221	6e-95	\| Symbols: YKT61, ATYKT61, ATGP1 \| SNARE-like superfamily protein \| chr5:23498277-23500128 FORWARD LENGTH=221