barSeed - Barley Seed Development Database

Probe CUST_34296_PI390587928

Source Contig U35_3577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34296_PI390587928	Hv_44K_v2	GTCCGTCCATCGTGTAATTCATGTGCTTATATATCTATCCATATCAATTAATGTTGTGCA	972	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.299	1.085	1.391	1.344	0.418	0.392
Raw	40201.367	51304.767	57945.600	80902.267	10291.607	10090.907

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374643	1041	6e-24	983 - 1041	100	59 / 59	plus	ABC08009 ABC45068
JLOC1	JLOC1_39872.1	1073	8e-25	1006 - 1065	100	60 / 60	plus
Harvest21	ABC45068	335	3e-25	16 - 75	100	60 / 60	minus	ABC45068
Harvest35	U35_3577	1047	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_3577 1047 Hv_44K_v2
GCGATGGCATCCTCCTCCTCTGCGGTCGTGGCTGCTCTGATCCTCTGCATCCTCATCGCC
CATGGCCATGGCTGCTTCGCCAAGAACCAAACGCTGGCCAATTCCAGCTGGCTCGACGCC
AAGGCGACATGGTATGGCAGACCGACCGGTGCCGGGCCAGACGACAACGGCGGCGCGTGC
GGGTTCAAGAACGTCAACTTGCCACCCTTCTCCTCCATGACCTCCTGCGGCAACCAACCG
CTCTTCAAGGACGGCAAGGGCTGCGGCTCCTGCTACCAGATAAGGTGCTTAAACTCGGAC
CACCCTGCGTGCTCCGGTGTGCCGAAGACGGTGATCATAACAGACATGAACTACGACCCA
GTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGTACGGA
CGCAACGACGAGCTCCGCCACGCCGGCATTATCAACATGCAGTTCAAGAGGGTGCCGTGC
CAGTACCCGGGGTTGACGGTGACGTTCCACGTGGAGGAGGGGTCTAACCCGTTCTACATG
GCAATCCTGGTGGAATACGAGAACGGAGATGGGGATGTGAAGCAGCTGGACATAATGGAG
TCGCGACCAGGTGTTGTCAATGGTGGCAAGATGACTCCAACGGGGGAGTGGGTGCCCATG
AAAGAGTCGTGGGGGTCCATCTGGAGGATGGATGCCCACCACCCCATGCGGGGGCCATTC
TCGTTGCGCGTCACCAACGAGTCCGGGAAGACGCTCGTCGCCGACAAGGTCATCCCCGGC
GATTGGAAGCCTAACAAAACCTACAGCTCCCTTGTCCAGTTTCATTAATTGATCGATCGA
CCAGATATGTCCATATATATGAAACTAATGAAAAAAGGGGAGTGCCCTGATTTAAAATGT
AATAATATGATACATGCGTGTGTGCCTATGTAGCAGGTTGAGACGTCGCCTGTGATGTCC
GGTTGCATGTGTGTCCGTCCATCGTGTAATTCATGTGCTTATATATCTATCCATATCAAT
TAATGTTGTGCAAAAAAAAAAAAAAAA

Homology of Contig U35_3577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01270.1	328	3e-144	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g78340.2	317	2e-147
Arabidopsis v10	AT1G65680.1	273	3e-73	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273