barSeed - Barley Seed Development Database

Probe CUST_34295_PI390587928

Source Contig U35_3578

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34295_PI390587928	Hv_44K_v2	TATCAACATGCAGTTCAAGAGGGTGCCATGCCAGTACCCGGGGTTGACGGTGACGTTCCA	420	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.127	0.860	1.543	1.651	0.486	0.537
Raw	8532.757	10176.047	15517.933	24513.873	2912.987	3420.377

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61067.1	1027	2e-24	508 - 567	100	60 / 60	plus	ABC08009 ABC45068
MLOC	AK374643	1041	7e-23	460 - 519	98	59 / 60	plus	ABC08009 ABC45068
JLOC1	JLOC1_39872.1	1073	8e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC08011	647	3e-25	454 - 513	100	60 / 60	plus
Harvest21	ABC08010	520	3e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC08008	880	1e-23	450 - 509	98	59 / 60	plus
Harvest35	U35_3579	650	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_3578	521	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_3577	1047	1e-23	450 - 509	98	59 / 60	plus

Contig Sequence (521 bp)

>U35_3578 521 Hv_44K_v2
GATCCTCTGCATCCTCATCGCCCATGGCCATGGCTGCTTCGCCAAGCACCAAACGCCTCA
TCCCGCGGCCAATTCCAGCTGGCTCGACGCCAAGGCGACATGGTATGGCAGACCGACCGG
TGCCGGGCCGGACGACAACGGCGGCGCGTGCGGGTTCAAGAACGTCAACTTGCCACCCTT
CTCCTCCATGACCTCCTGCGGCAACCAACCGCTCTTCAAGGACGGCAAGGGCTGCGGCTC
CTGCTACCAGATAAGGTGCTTAAACTCGGACCACCCTGCGTGCTCCGGTGTGCCGAAGAC
GGTGATCATCACAGACATGAACTACGACCCAGTCTCCCGCTACCACTTCGACCTCAGTGG
CACCGCCTTCGGAGCCATGGCCAAGTACGGACGCAACGACGAGCTCCGCCACGCCGGCAT
TATCAACATGCAGTTCAAGAGGGTGCCATGCCAGTACCCGGGGTTGACGGTGACGTTCCA
CGTGGAGGAGGGGTCGAACCCGTTCTACATGGCAATCCTGG

Homology of Contig U35_3578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01270.1	328	2e-93	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g78340.2	317	3e-96
Arabidopsis v10	None