barSeed - Barley Seed Development Database

Probe CUST_34294_PI390587928

Source Contig U35_3579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34294_PI390587928	Hv_44K_v2	AGCAGCTGGACATAATGGAGTCGCGACCAGGTGCTGTCAATGGTGGCAAGATGACTCCCA	584	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.262	0.969	1.426	1.592	0.454	0.479
Raw	7985.200	9560.677	12124.267	19971.733	2278.120	2542.150

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374643	1041	9e-22	591 - 648	98	57 / 58	plus	ABC08009 ABC45068
Harvest21	ABC08011	647	3e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC08008	880	2e-22	581 - 638	98	57 / 58	plus
Harvest35	U35_3579	650	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_3577	1047	2e-22	581 - 638	98	57 / 58	plus

Contig Sequence (650 bp)

>U35_3579 650 Hv_44K_v2
AACAGCGATGGCATCCTCCTCCTCTGCGGTCGTGGCTGCTCTGATCCTCTGCATCCTCAT
CGCCCATGGCCATGGCTGCTTCGCCAAGAACCAAACGCTGGCCATTTCCAGCTGGCTCGA
CGCCAAGGCGACATGGTATGGCAGACCGACCGGTGCCGGGCCAGACGACAACGGCGGCGC
GTGCGGGTTCAAGAACGTCAACTTGCCACCCTTCTCCTCCATGACCTCCTGCGGCAACCA
ACCGCTCTTCAAGGACGGCAAGGGCTGCGGCTCCTGCTACCAGATAAGATGCTTAAACTC
GGACCACCCTGCGTGCTCCGGTGTGCCGAAGACGGTGATCATCACAGACATGAACTACGA
CCCGGTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGTA
CGGACGCAACGACGAGCTCCGCCACGCCGGCATTATCAACATGCAGTTCAAGAGGGTGCC
ATGCCAGTACCCGGGGTTGACGGTGACGTTCCATGTGGAGGAGGGGTCGAACCCGTTCTA
CATGGCAATCCTGGTGGAGTACGAGAATGGCGATGGGGATGTGAAGCAGCTGGACATAAT
GGAGTCGCGACCAGGTGCTGTCAATGGTGGCAAGATGACTCCCACGGGGG

Homology of Contig U35_3579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01270.1	328	1e-106	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g78340.2	317	6e-109
Arabidopsis v10	AT2G45110.1	259	2e-51	\| Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 \| expansin B4 \| chr2:18599575-18601237 FORWARD LENGTH=259