barSeed - Barley Seed Development Database

Probe CUST_34279_PI390587928

Source Contig U35_13304

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34279_PI390587928	Hv_44K_v2	TGTTATGCTACCGGTAGCTATGGGCAGCCTACAGCGTATTCTACTGAAGTTACAACACAT	773	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32089.1	1252	9e-22	469 - 526	98	57 / 58	minus	ABC07126
MLOC	MLOC_32089.2	1127	9e-22	311 - 368	98	57 / 58	minus	ABC07126
JLOC1	JLOC1_20995.2	1144	5e-22	775 - 832	98	57 / 58	plus
Harvest35	U35_13304	915	3e-25	774 - 833	100	60 / 60	plus

Contig Sequence (915 bp)

>U35_13304 915 Hv_44K_v2
GCACGTAGGCTTTAGCATTGCATACTACAGAATCACCGAACAAGCATACATATATAGTGA
ACGACGGGAAGGCATATTAGAGAATTTTCACCACATGAAGCCATGCAAGAATCGTGCCAG
AAATCCAACAGGGCTACCATCCTCTCTGCCCTCAGGCAAACTGGGCTGCGCCTGATGCAC
CAGCAACACAACAGCATGTTTACATGCAGCCTGGAGCTTATCCTGGCGCACCACCATAGT
ATGGCCAGCAACCTTATGGCACAGCAGCTCCCCTTGGCACTGGCTATGACTACTATAACC
AACAGCAGCAATCCCAACAACAACAGTCTGCCACTGGAACTGCTGTGCCTGCTGGTGCTA
GCAGGTACAATTACAGCCAGCCTGCTACTCATGCTTCACAAGGGTATGGTACTGCACCGA
GCTACGGTGGTCCAGGTGGAGCTGGTCAAGCATCTTCAGGGCAGCAAGCTTCAACTCCAG
CCACTGGAGGCCAACTGGGTTATCCTAATCAAGCACCTATACTAGTGCTGCTGCATCAAG
CTAAACGGCGCAAGGTTTTGCCCCTCAATATGGATACATTGCTCCACAGACACAGCCTGT
CTATGATATGCAGCCACCACCACTGGGCACGTATGGCCAGGGTGCTTATGGGTAGCCTCT
GCATGCTCAGAAGCCGCCTTCATCTGCTCCGTATGGACAGGCACACTCAGGCTGGTTATG
GGCAGTATGGATACAGTCAGCCAGGCTATGGCCAGTAGCAGTCATACTGTGATTGTTATG
CTACCGGTAGCTATGGGCAGCCTACAGCGTATTCTACTGAAGTTACAACACATGCTGCGT
CCCAGGATCAATCCACCGCCGGACCTGCGTGTACCACAACAACTGCCATTCCTGCTCGTG
CTAATAGTGCCCCCA

Homology of Contig U35_13304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None