barSeed - Barley Seed Development Database

Probe CUST_34152_PI390587928

Source Contig U35_9488

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34152_PI390587928	Hv_44K_v2	ATCAACAACGTGTCGTTCGTGATGCCCAAGACGTCGCTCCTGCAGGCGCACTACCAGCGC	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22174.2	2130	2e-24	649 - 708	100	60 / 60	minus	ABC18136 ABC18746
MLOC	MLOC_22174.1	2702	2e-24	690 - 749	100	60 / 60	minus	ABC18136 ABC18746
JLOC1	JLOC1_15369.1	2612	8e-25	1670 - 1729	100	60 / 60	plus
Harvest21	ABC19562	816	3e-25	693 - 752	100	60 / 60	plus
Harvest35	U35_9488	816	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_9488 816 Hv_44K_v2
CCCTCATGCGGGGGGAGTGGTTCAACGCCGACCCGGAGGCGGTGATCAAGCAGGCGCTGC
AGACCGGCGGAGGCCCCAACGTGTCCGACGCATACACCTTCAACGGCCTCCCTGGCCCCA
CGTACAACTGCTCGGGCGCCAACGGCACGTTCAAGCTCAAGGGGAAGCCCGGGAGGACGT
ACATGCTGCGGCTCATCAACGCGGCGCTCAACGACGAGCTCTTCTTCGCCGTGGCCAACC
ACACGCTCACCGTCGTGCAGGCGGACGCCAGCTATGTCAAGCCGTTCGCCGCCACCACGC
TCGTCATCTCGCCGGGCCAGACCATGGACGTGCTCCTCACCGCGGCCACCAACCCGTCCT
CCGCGGCCTTCGCCATCGCCGTCGCGCCATACACCAACACGGTGGGGACCTTCGACAACA
CCACCGCCACCGCCGTCCTCGAGTACGCCCCGCAGAGGTTCGCCGCGATCCGCAACCTCC
CGGCGCCGCCCCTCCCGCGGTACAACGACACGGGCGCGGTGACCAACTTCTCCTCCAAGT
TCCGGAGCCTCGCGAGCGCGCAGTACCCGGCGCGGGTGCCGCTGAGCGTGGACCGGCACT
TCTTCTTCACCGTGGGGCTGGGCGCGGACCCGTGCCAGAGCCCGGTGAACGGGACGTGCC
AGGGCCCCAACAACACCCGGTTCGCGGCCTCCATCAACAACGTGTCGTTCGTGATGCCCA
AGACGTCGCTCCTGCAGGCGCACTACCAGCGCCGCTACAACGGCGTGCTCGCGGCCAACT
TCCCCGCGGCGCCGCTGCGCAAGTTCAACTACACCG

Homology of Contig U35_9488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38390.1	514	1e-162	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g23370.1	581	4e-167
Arabidopsis v10	AT5G60020.1	577	6e-106	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577