barSeed - Barley Seed Development Database

Probe CUST_34032_PI390587928

Source Contig U35_20794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34032_PI390587928	Hv_44K_v2	TATCAAACCTATTTGGAGAACTGTCCTTTAAGCAAGCCAAATATCTGAGGTTTTGTCAAA	545	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362770	2185	2e-24	2108 - 2167	100	60 / 60	plus	ABC15022 ABC16112
JLOC1	JLOC1_24249.2	1977	8e-25	1866 - 1925	100	60 / 60	plus
JLOC1	JLOC1_24249.1	1650	8e-25	1539 - 1598	100	60 / 60	plus
Harvest21	ABC15022	619	3e-25	15 - 74	100	60 / 60	minus	ABC15022
Harvest35	U35_20794	619	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_20794 619 Hv_44K_v2
GAAAGGCGTTGCCGAGGAGAGGATCATATTCCTCACTCTCATTGCGGCACCCGAAGGGAT
TCAATGTGTGTGTACGCGATTTCCAAAGTTGAAACTTGTGACATCAGAGATAGATACCGG
GTTGAGCGAGGAATTCAGAGTCATCCCAGGTTTGGGAGAGTATGGTGATCGCTACTTCGG
CACAGACAACTGATGACTCGTACTGCTATCGATGTCTGTGCGAAAGCCGACTTAATCTGA
GAAGGATGGTGGTACAACCGGCGGTAGCACCAATTGGATTGAGAAGACATTCCGGGGAAA
CAGATGTTGAATCAGACGATACAACATGGATTTTTTTTTAGACTCCAGAGTTAGATATCC
GTCCTTAGCCATTGCCGGAGCTAGTAGTCTGGCCTTAGCCCTGAGTTGGGGGTAGTAGAA
GTAATTGCAAGCTCGTTTCGTTTGAATATCTCTGTTGCTGTGCTGCTTCAGCTGAGGCAA
CATGATTGAGCCTTAAATGTCCAGATGCGCATTACTAGCTGTTTCACTGCAATTGTGTAA
AATTATATCAAACCTATTTGGAGAACTGTCCTTTAAGCAAGCCAAATATCTGAGGTTTTG
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None