barSeed - Barley Seed Development Database

Probe CUST_34023_PI390587928

Source Contig U35_18480

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34023_PI390587928	Hv_44K_v2	GAGGTATCTTTTGGGTTCTCTCTGTAACCTCTGTATGTATGATGTTCGGATTTCAAAAAA	1154	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2788.1	1253	3e-21	24 - 77	100	54 / 54	minus	ABC09932 ABC14148
JLOC1	JLOC1_1660.1	1301	2e-21	1186 - 1239	100	54 / 54	plus
Harvest35	U35_18480	1225	3e-25	1155 - 1214	100	60 / 60	plus

Contig Sequence (1225 bp)

>U35_18480 1225 Hv_44K_v2
AGAATCTCCACCCCACCAACCCGCCCGCCCGCACGCGCGCGATTCGATCCCCACCGCCCA
GGCCCGGCGCGGCGGCCATGGGCTCGACGCCGGGGAGCAGCTACGACTGCTCCTTCAAGG
TGCTGCTCATCGGGGACTCCGCCGTCGGCAAGAGCAGCCTCCTCGTCAGCTTCGTCTCCG
CCGCCCCCACTGACGACGACATCTCCCCCACCATAGGGGTGGATTTTAAAATCAAGTTTC
TCACTGTTGGTGATAAGAAATTGAAGTTGACAATATGGGACACCGCTGGCCAGGAGAGGT
TTAGGACAATCACTAGTTCTTACTACAGAGGTGCTCATGGAATTATCCTAGTTTATGATG
TTACAAAGAGACAAAGTTTCACAAATTTGGCTGACGTATGGGCCAAGGAAATAGAATTGC
ACTCAACGAACAAAGAGTGCGTCAAAATGCTTGTTGGAAACAAACTGGGCAAGGATGAGG
ACAGAATGGTAACAACAGAAGAAGGTCTTGCCTTTGCACAGCAATGTGGATGCCTTTTTC
TCGAAAGCAGTGCCAAAACAAGAGAAAATGTGGAGAAATGTTTTGAAGAGCTTGTGCTAA
AGATTCTTGAGGTTCCAAGTCTGTCGGAGGAAGGCTCGTCGGTCGTCAAGAGGAACTCGC
TGAAACAGAAGCATGAGAAGAGTGGGGGATGCTGCCAGTAGATCCGATCCGATCCAGTCA
CTTTATGCAACCAACTAGATCTCGCAATCGGTGCCTAGGCTAGGTTGTTCTTGGTTGGTG
TTCTGATGTAAATGAGTCGTTGTATCTAAGTGAAGTGATCATCGGTGGCGAGTAAAGGGG
AGGGAGAAATAACAACTTGAGGTTTTGGTGTGAAGGGTGGGGGAATTAATTGACCTGTAC
AAATAGAAGAGAAGAAGACGCTGTCTCCTAACCCAGCTTGGTCTGGCTACTCGGTTTGCT
GATTGTAATGAGGTCCGGTGACTCGGCGAGCCGATACGCTTCCGCACCGGTGTGGTGGTG
TGCGTGGGAGGGAGTGTACTGCTGGTATATAATTCAGGAGGGGGTGTTTTCTGGTTTCAG
GTATCTTTTTCTTCTTCTTTTCGTTTCTTTCGAAAATGGCAGTTATCCTGCATTCAGGGG
GTGTTTTGTGGTTTGAGGTATCTTTTGGGTTCTCTCTGTAACCTCTGTATGTATGATGTT
CGGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g05280.1	211	2e-124	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g75340.1	213	1e-130
Arabidopsis v10	AT5G03530.1	210	1e-97	\| Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A \| RAB GTPase homolog C2A \| chr5:885741-887061 REVERSE LENGTH=210