- Probe CUST_33977_PI390587928
- Source Contig U35_44777
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33977_PI390587928 | Hv_44K_v2 | CCGCTTCTGGAACTACCGTGTCTCATGTGTCTGACATTGTTGGACCGACTGGGTTGGTGT | 349 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.955 | 1.033 | 2.112 | 1.853 | 0.696 | 0.637 |
| Raw | 6311.527 | 10775.400 | 19004.500 | 26746.137 | 3544.207 | 3501.917 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4782.1 | 1018 | 2e-24 | 276 - 335 | 100 | 60 / 60 | plus | ABC03454 ABC03456 ABC03457 ABC31801 |
| MLOC | AK372087 | 2659 | 7e-23 | 2032 - 2091 | 98 | 59 / 60 | plus | ABC03454 ABC03456 ABC03457 ABC16873 ABC31801 |
| JLOC1 | JLOC1_3025.1 | 1119 | 8e-25 | 349 - 408 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03457 | 1217 | 1e-23 | 533 - 592 | 98 | 59 / 60 | plus | ABC03457 |
| Harvest21 | ABC03455 | 700 | 1e-23 | 311 - 370 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03453 | 703 | 1e-23 | 259 - 318 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_44777 | 490 | 3e-25 | 350 - 409 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1065 | 1240 | 1e-23 | 567 - 626 | 98 | 59 / 60 | plus |
Contig Sequence (490 bp)
>U35_44777 490 Hv_44K_v2 AAAACCCTAAACCCTCCCCCGGCGGCGGCGGCGGCGGCTACCAGCACCACACGACCCACA CACCATGAGGGTGGCCCCGGCATGAAGGGCGGTGCCAAGGTGGTCGTCGTGCCCCACAAG CACGACGGCGTCTTCATCGCCAAGGCCAAGGAGGACGCGCTCTGCACCAAGAACATGGTC GCCGGCGAGTCCGTCTACGGCGAGAAGAGGGTCTCCGTCCAGAATGAGGATTCATCCAAG GTCGAGTACAGGGTGTGGAACCCCTTCAGGTCCAAGCTGGCTGCTGCCGTGCTAGGTGGT GTGGACAACATCTGGATTGCTCCTGGAACTCGTGTGCTGTATCTTGGAGCCGCTTCTGGA ACTACCGTGTCTCATGTGTCTGACATTGTTGGACCGACTGGGTTGGTGTATGCTGTTGAG TTCTCTCACCGGAGTGGCAGGGATCTTGTCAACATGGCCAAGAAGAGGACCAATGTCATC CCCATCATCG
Homology of Contig U35_44777 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g57590.2 | 237 | 3e-90 | protein|rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed |
| Brachypodium v1_2 | Bradi1g32010.1 | 303 | 4e-93 | |
| Arabidopsis v10 | AT5G52470.1 | 308 | 4e-80 | | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin 1 | chr5:21294290-21296509 FORWARD LENGTH=308 |