barSeed - Barley Seed Development Database

Probe CUST_33878_PI390587928

Source Contig U35_25485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33878_PI390587928	Hv_44K_v2	TCTTCTTCGCCAGGAAGCGTAACAAGTACGGGCCCATCTTCAAGACGCACATCCTCGGGT	288	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4786.1	2422	2e-24	575 - 634	100	60 / 60	plus	ABC11708
JLOC1	JLOC1_3029.1	2336	8e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC26337	529	3e-25	289 - 348	100	60 / 60	plus
Harvest35	U35_25485	529	3e-25	289 - 348	100	60 / 60	plus

Contig Sequence (529 bp)

>U35_25485 529 Hv_44K_v2
GACCACCACCACCCATCTCCCCTCCTCTCCTCCTCGTCTTCCTCCTTCGGGCCTCCGTTG
CAGGTTGCAGGTAACAGAACCGAAGAAATCCTTTTGGAATGGGTGCCTTCATCCTCCTCC
TCTGCTTGCTCGTGCCGTTGGTGCTCGTGTGCGCCGTCCGCGCCAGGAAGGGCGCCGGCG
GGCGGTCGTCGTCGGGCGGCGGCAAGAAGGGCAGGCTGCCGCCGGGGTCCATGGGGTGGC
CGTACGTGGGCGAGACCACGCAGCTCTACTCCTCCAAGAACCCCAACGTCTTCTTCGCCA
GGAAGCGTAACAAGTACGGGCCCATCTTCAAGACGCACATCCTCGGGTGCCCCTGCGTCA
TGGTGTCCAGCCCGGAGGCCGCCAAGTTCGTGCTCGTCACGCAGGCGCACCTCTTCAAGC
CTACCTTCCCGGCCAGCAAGGAGCGGATGCTGGGCCGCCAGGCCATCTTCTTCCAGCAGG
GGGACTACCACACCCACCTCCGCCGTCTCGTCTCCCGCGCCTTCTCCCC

Homology of Contig U35_25485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47470.1	472	1e-63	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi3g52660.1	480	1e-65
Arabidopsis v10	AT4G19230.2	484	2e-52	\| Symbols: CYP707A1 \| cytochrome P450, family 707, subfamily A, polypeptide 1 \| chr4:10521524-10523566 FORWARD LENGTH=484