barSeed - Barley Seed Development Database

Probe CUST_337_PI415269222

Source Contig TA30437_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_337_PI415269222	Hv_44K_v2	TCTTCTAGTACTTGTTCCTAGCTAGCTCTAGTTGAGTGGGCATACATTTGGGAGCATCGA	210	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357837	1341	2e-24	43 - 102	100	60 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC40934
MLOC	MLOC_23930.1	612	2e-24	193 - 252	100	60 / 60	plus	ABC02669 ABC02670 ABC02673
JLOC1	JLOC1_16504.1	636	8e-25	214 - 273	100	60 / 60	plus
Harvest21	ABC41151	555	3e-25	24 - 83	100	60 / 60	plus
Harvest21	ABC02669	1313	3e-25	30 - 89	100	60 / 60	plus	ABC02669
Harvest35	U35_398	1362	3e-25	46 - 105	100	60 / 60	plus
Harvest35	U35_177	581	3e-25	24 - 83	100	60 / 60	plus

Contig Sequence (1068 bp)

>TA30437_4513 1068 Hv_44K_v2
CTGGTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAG
AACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACG
AATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGGAGTACACAAACACA
AGCTTCTATCAACCTTTCTCCCCATCTTCATCTTCTAGTACTTGTTCCTAGCTAGCTCTA
GTTGAGTGGGCATACATTTGGGAGCATCGAGCACGAAACGCATGGCTCGCATGGGGGCGT
CGGTGCTGGTGATCCTGCTCGCCTCTTGTGCCCTGGCGGCGGCGAGCTTCGACAAGGAGT
TCGACGTTACCTGGGGTGACGGGCGCGGCAAGATCCTCAACAATGGCCAGCTGCTGATGC
TGGGGCTGGACAAGGTCTCCGGCTCCGGGTTCCAGTCCAAGCGCGAGTACCTCTTCGGCA
AGATCGACATGCAGCTCAAGCTCGTCCCCGGCAACTCCGCCGGCACCGTCACCGCATATT
ACCTGTCGTCGCAGGGTCCGACGCACGACGAGATCGACTTCGAGTTCCTGGGCAACGTCA
CCGGCGAGCCATACACGCTGCACACCAACGTGTTCACGCAGGGGCAGGGCCAGCGGGAGC
AGCAGTTCCGCCTCTGGTTCGATCCTACCAACGACTTCCACACCTACTCCATCCTCTGGA
ACCCGAAGCACATCATCTTCTTGGTTGACGACATGCCGATCAGGGACTTCAGGAACATGG
AGGGAAAGGGGATCGCCTTCCCCAAGAACCAGCCTATGCGGCTGTACTCCAGCCTCTGGA
ACGCCGACGACTGGGCGACACAGGGTGGCCGCGTCAAGACCGACTGGTCCCACGCTCCGT
TTTCCGCCTCCTACCGCGGCTTCAAAGCCGACGCGTGCGTGGTGACCGTATGTGGCCGGC
CGCGCTGCGGCGCCAGCATCGGCACGGACGCGGGCCCAAGGACCGGCTGCGCGGCCGCGG
TCTGCGACTGGTACCACCAAGAGCTGGATCTTACGCNGCAACAGCGCT

Homology of Contig TA30437_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	1e-157	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	1e-154
Arabidopsis v10	AT5G57550.1	284	6e-123	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284