barSeed - Barley Seed Development Database

Probe CUST_33769_PI390587928

Source Contig U35_4626

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33769_PI390587928	Hv_44K_v2	TTTGACAGTAGTACATTACTTTATTCTAGAAACTAAGTGGGCGCCATTTGTGATGAGATT	582	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.559	1.850	1.148	0.772	0.325	0.478
Raw	620.744	1141.416	628.716	671.144	97.752	158.326

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373225	690	2e-24	600 - 659	100	60 / 60	plus	ABC09975
MLOC	MLOC_38721.1	1201	2e-24	848 - 907	100	60 / 60	plus	ABC09975
JLOC1	JLOC1_25197.1	698	8e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC09975	659	3e-25	583 - 642	100	60 / 60	plus	ABC09975
Harvest35	U35_4626	659	3e-25	583 - 642	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_4626 659 Hv_44K_v2
GCTCAATCAAATCAAAAAAGAAAAGAAGAAGCGAGCGAGGGGCAGAATCACCAATGGCGG
GCGGTGGGCTGTCCGGCGGCGCGGCCGCGTTCTGGGCGACAAGAGCGCTGGAGGTGGTTA
AGCGGAACGACTCCCCGGGGCTGTTGTGGAAGCGGATCAAGCTCACCACCACCCGCAAGA
ACAACGCCAAGAAACGCCTAAAGCGCCTCTGGCAGAACGAAGCAGTTATAAGGGCTTGTA
CTCAAGCAGAATCATCGTCAACTTCAAACACGGCTGCCACATCTGAGAAACAGCAGTAGT
TTGCATAGTCAACTCATGGTTTGTGGTGAAGAAACTGATATGCAGTTAAAAGATGGGCGT
TGAACTTGCATAACATGCTGAAGCCTAAAACAATATCCTTCCATATACGTTTTAGTTTGT
CTTGTCAGAAGTTTGAACAATTGCATGCATGTACGCATCGACTTTCTTCATTAAGAGGAT
ATCATTCCTTGCCGCCATGGGCATCTCTGCCCCATCCGGCTTACGTAAGCTTGTAGCATC
ACTTCCCACTTCATGAAAGTTCACTGTTTCTTTTTTGTTTTGTTTGACAGTAGTACATTA
CTTTATTCTAGAAACTAAGTGGGCGCCATTTGTGATGAGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None