barSeed - Barley Seed Development Database

Probe CUST_33767_PI390587928

Source Contig U35_4628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33767_PI390587928	Hv_44K_v2	CCAAAGGCAGTCACCGATTTTTCTTTTTGATAATTACAATGCACTAACATGGATTTGAAC	1346	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68945.3	2227	2e-24	2074 - 2133	100	60 / 60	plus	ABC12353
JLOC1	JLOC1_45663.2	2159	8e-25	2061 - 2120	100	60 / 60	plus
JLOC1	JLOC1_45663.1	2059	8e-25	1961 - 2020	100	60 / 60	plus
Harvest21	ABC51288	428	3e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_4628	1418	3e-25	1347 - 1406	100	60 / 60	plus

Contig Sequence (1418 bp)

>U35_4628 1418 Hv_44K_v2
GCTGAACGCTTAGGAGGCACGGGATATGTTTGCAGCACATATCTTGGATCAGCGCCCAGC
TCCATAGATATTATAAGAATGTATAATTTGAGCAGCGACATGGCCAGCAGGATTTTCCAG
GCACCACTTGGTGACCTCTGCTCCTTGCAAAGTTCTGGTGACCTTTGCTCCTTGCAAAGT
TCTGGCGATGCTCCTTCAGTCCTCAGTGGTAGCATTCAAGGCGATGTGGTCGAAACTGCT
GCTGTACCAGATGAGGCTCTTCAGTTGTCCCCGGCAAAACCAGTTGATACAGCAGTATCA
GATGGGAATGCGCAGTCAACAACAGCGCAGCCAATTGATATAGAGGTCCCTGAGCCTGCA
ACGGATGAGCACCTTAATCAAGGTGACATTTCTATGTTGGATTGCAAAGGAAGTAATGGC
AATTCAATAGCTCCCAAAGCGCCGAGAGCAGGAAAAGCACCCTCACCAGAGAGGATGAAG
TATTGGGGAAAACATGGGTTTAGCAGTTTGATTGTTGCTGCTCCGGGCCATGAGGTAGAA
AGTGTGGTTGCCGATTTGCTTCCACTCCTGTCTTACTCGGCCCCATTTGCTATCTATCAC
CAATATCTTCAGCCTCTTGCGACATGCATGCATAGTTTGCAAGTGTCGAAAATGGCAATT
GGGTTACAGATTACTGAACCCTGGCTCCGAGAGTATCAGGTCCTTCCATCGCGCACCCAC
CCACACATGCAGATGAATGCATTTGGTGGTTATATCTTGAGCGGCATCCGGATACACAAG
CCTGACCCATCGGAAGCGCGAATGCCAGAGAAGTCATCTTGCGTGACTGGCGTGACGGAG
AGCATGCTTGTCTTGTGATTTATACTTGGTTCGTGCAGCTGTAGCTTTTCTTTGCGCTGA
TATGGTTTGGTCGCGGCTTTTTTTACATGTTGCAGTGTGATACGGCTTGGTCGCGGCTTA
GGTTAGAGAAGGACAATATCTATACCTGAAAACAAGTATGCCATCCCTCCCTCCACTGTG
GGAAGGATGTGTAACATATGCCTGCATTAATTTCTCCATGTTGTAACTGTGGTCGATTCT
CACCCCAGTTTGATCCATTCACTTTTCTACAAGCAATGGAACATTTTATTACAAAGAGGG
GTACACAGCAGGATTATATGCGGCGATCGGAGGAGCAGAGGGGAGGAGGAAAGCTGCCGG
ATCTCGCCGGCCTCCCGCGAGGCAGGCAGCCTTGCTGTATACACATGTGCTTGATTTCTC
CTCTCCAAGTCAAGATGGAAAATGCTCCCCAAAATAGAAAACAAATAGAGTGTTTCTTTT
CTTGTATTGAATTGAACATATGAAAGCCAAAGGCAGTCACCGATTTTTCTTTTTGATAAT
TACAATGCACTAACATGGATTTGAACATTTACCATTGG

Homology of Contig U35_4628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g02150.2	476	3e-125	protein\|tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g01890.1	476	5e-133
Arabidopsis v10	AT2G45730.1	446	2e-61	eukaryotic initiation factor 3 gamma subunit family protein \| chr2:18836519-18839123 REVERSE LENGTH=446