- Probe CUST_33766_PI390587928
- Source Contig U35_4629
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33766_PI390587928 | Hv_44K_v2 | GTGGTCGATTCACATCCCAGTTTTGATTAATTCACTCTTTCTACAAGTGGAACATTGTCT | 603 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.411 | 2.085 | 1.132 | 0.790 | 0.271 | 0.404 |
| Raw | 3494.300 | 4777.110 | 2269.580 | 2590.789 | 298.919 | 487.969 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370295 | 1897 | 2e-24 | 1789 - 1848 | 100 | 60 / 60 | plus | ABC12353 |
| MLOC | MLOC_44694.3 | 1275 | 2e-24 | 7 - 66 | 100 | 60 / 60 | minus | ABC12353 |
| MLOC | MLOC_44694.1 | 1808 | 2e-24 | 9 - 68 | 100 | 60 / 60 | minus | ABC12353 |
| MLOC | MLOC_44694.2 | 1868 | 2e-24 | 9 - 68 | 100 | 60 / 60 | minus | ABC12353 |
| JLOC1 | JLOC1_28982.2 | 1299 | 8e-25 | 1191 - 1250 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28982.1 | 1256 | 8e-25 | 1148 - 1207 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12353 | 666 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus | ABC12353 |
| Harvest35 | U35_4629 | 666 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus |
Contig Sequence (666 bp)
>U35_4629 666 Hv_44K_v2 TAGCTCCCAAAGCACTGAGAGCAGGAAAAGCACCCTCACCGGAGAGGAAGAAATATTGGG GAGAACATGGCTTTAGCAGTTTGATTGTTGCTGCTCCTGGGCACGAGGTGGAGAGTGTGG TTGCTGATTTGCTTCCACTCTTGTCTTATTCGGCCCCATTTGCTATCTATCACCAGTATC TTCAGCCTCTTGCGACTTGCATGCATAGTTTGCAAGTATCAAAGATGGCTATTGGCTTAC AGATTACTGAACCCTGGCTTCGAGAGTATCAGGTCCTTCCATCGCGCACCCACCCACACA TGCAGATGAATGCGTTTGGTGGGTATATATTGAGCGGCATCCGGATACACAAGCCAGACC CGCAGTAAACATGGGAGTGCCAGAGAAGTCATCTGGCATGACGGAGAGCGTGCTTGTCAC AGTGATTTATACTTGATTCACGCAGTTGTAGTTCTATTTTCCGTATGGGTTGTGGTAATA CGGTTATGTCGCGGCCTAGCTAGGTCTGAGGAAGATTGCGTGTGCACTTGAAAACAGGCA TGCCATCCCTAACCTGTGAGAAGGGCATGTAACATATGCCGGCATTGTATACTTGTTGTA ACCGTGGTCGATTCACATCCCAGTTTTGATTAATTCACTCTTTCTACAAGTGGAACATTG TCTTGC
Homology of Contig U35_4629 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g02150.2 | 476 | 4e-71 | protein|tRNA methyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi5g01890.1 | 476 | 4e-68 | |
| Arabidopsis v10 | None |