barSeed - Barley Seed Development Database

Probe CUST_3373_PI390587928

Source Contig U35_11878

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3373_PI390587928	Hv_44K_v2	GCCTTTGTAGGAACATGTAACCTGTGTGCTGGAAATAAAAATATACGTATGCGAGTACCG	552	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71796.1	687	2e-24	5 - 64	100	60 / 60	minus	ABC09843 ABC18182 ABC38691
Harvest21	ABC38692	353	3e-25	25 - 84	100	60 / 60	minus
Harvest21	ABC38691	631	3e-25	553 - 612	100	60 / 60	plus	ABC38691
Harvest35	U35_11878	636	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_11878 636 Hv_44K_v2
GCTGCAGCAACTAGTACAACACTAGCAAAGACCGACCGATCGAGCAGCTAGCTGCTAGCA
ATAAGGAGAGTAAGAGGAAGAAGAAACATGGCGGCGGGGGGCGTGTGGGTGTTCAAGAAC
GGGGTGATGGAGCTGGAGCAGGAGGCGACGAGCCGGAAGGCGCTGATGTACGTGCCGGCG
AACGAGAGGATGCAGTCGCTGGAGGCGTTGGAGCGGCGGCTCGGGTCGCTGGGGTGGGAG
CGCTACTACGAGGACCGCGCCATCGTGCAGCTCCACAAGCGCGGCGGCGTCGACCTCATC
TCCGTTCCCCGGGACTTCTCCAGGCTCCGCTCCACCCACATGTACGACGTCGTCGTCAAG
AACCGCGACCACTTCAAGGTTGTCGACTTCTAGTTAGCCATCTTCATCGGTAATATTCTT
CATATTCTGGGCGGATAAATTCGTGGCTCTGCACCACAAATATATGTATAGACGTCATAT
ACGAATAAGCACCTACGTGTGCGATTATGCATGTGTTGTACTGTCCATGTGTGACTTAGT
ATATACCCGTGTGCCTTTGTAGGAACATGTAACCTGTGTGCTGGAAATAAAAATATACGT
ATGCGAGTACCGGGGTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_11878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g18240.1	109	1e-51
Arabidopsis v10	None