barSeed - Barley Seed Development Database

Probe CUST_336_PI415269222

Source Contig TA30814_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_336_PI415269222	Hv_44K_v2	GGCGGAGCATTATAGATTGGGTAAAAGTATAATTTCTATGCCTACGTATATGGATGTAAA	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56250.1	1376	2e-24	1247 - 1306	100	60 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673
JLOC1	JLOC1_36362.1	1327	8e-25	1124 - 1183	100	60 / 60	plus
Harvest21	ABC02672	1059	3e-25	935 - 994	100	60 / 60	plus	ABC02672
Harvest35	U35_168	1587	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (626 bp)

>TA30814_4513 626 Hv_44K_v2
CGGCCGAGGCAAGGGCGGCCGGGAGCAGCAGTTCCGCATGTGGTTCGACCCCACCGCCGA
CTTCCACACCTACTCCGTCCTCTGGAACCCCACACACATCCTGTTCTACGTGGACGGGAC
GCCGATACGGGAGCACCGCAACCGGGAGGCGGCGACGGGGGTTCCCTACCTGCGGAGCCA
GGCGATGAGGGTGTACGCGAGCGTGTGGGACGCGGAAGAGTGGGCGACGCAGGGCGGGCG
GGTGAGGACGGACTGGTCGCGGGCGCCGTTCGTGGCGTCGTACAAGGGGCTCGCCGCGAG
CGGGTGCGCGTCGCAGGACGCGGCGGCGTGCGCCAACTCCAACGGCGCGTGGATGTACCA
GGAGCTGGACGCCACGGCGTTGGACCGCCTCCAGTGGGTGCAGAAGAACTACATGATCTA
CAACTACTGCACGGACACGTGGAGGTTCAAGGACGGCGCCCCGCCCGAGTGCGCCAGCAA
GTAGAATGTCTTGTCTTGTGGCGACGTTGCCGGGGTCGGGCGGAGCATTATAGATTGGGT
AAAAGTATAATTTCTATGCCTACGTATATGGATGTAAATGTAACCATGCAATGTAATTAA
GTATATAAATACATACATGATATAAT

Homology of Contig TA30814_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48180.1	289	1e-79	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33827.1	284	2e-85
Arabidopsis v10	AT4G25810.1	286	1e-61	\| Symbols: XTR6, XTH23 \| xyloglucan endotransglycosylase 6 \| chr4:13128694-13129715 FORWARD LENGTH=286