- Probe CUST_336_PI390587928
- Source Contig U35_20039
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_336_PI390587928 | Hv_44K_v2 | CCAATGGCACTGGAACAAGTTTTCTCGGATCGTGATAGTGAAGATGAAGTTGATGATGAC | 698 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK253078.1 | 2499 | 2e-24 | 1803 - 1862 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.6 | 1805 | 2e-24 | 1040 - 1099 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.7 | 712 | 2e-24 | 405 - 464 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.5 | 3000 | 2e-24 | 1753 - 1812 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.4 | 3023 | 2e-24 | 1779 - 1838 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.3 | 1871 | 2e-24 | 1779 - 1838 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_64864.2 | 2426 | 2e-24 | 1834 - 1893 | 100 | 60 / 60 | plus | ABC13445 |
| MLOC | MLOC_64864.1 | 2599 | 2e-24 | 1882 - 1941 | 100 | 60 / 60 | plus | ABC13445 |
| JLOC1 | JLOC1_42631.3 | 2600 | 8e-25 | 1821 - 1880 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42631.2 | 2686 | 8e-25 | 1907 - 1966 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42631.1 | 2743 | 8e-25 | 1964 - 2023 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39316 | 620 | 3e-25 | 501 - 560 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20039 | 818 | 3e-25 | 699 - 758 | 100 | 60 / 60 | plus |
Contig Sequence (818 bp)
>U35_20039 818 Hv_44K_v2 CTCAAGAGGCTGGTGCAAGAGACATGTCTGAATCTCCATATAGTAGTTACTCATACAGTG GTGTCCCACCTTCATCATTACCACATATCATAAGGTTGAGAGCTGGTAATGTGCTTTTCA ACTTCAAGTACTACAACAATACTATGCAAAAGACTGAAGTCACTGAAGATTTTGCCTGCC CCTTCTGCTTGGTAAAGTGTGGAAGCTACAAGGGTTTGGGGTGTCACTTGAACTCATCAC ATGACCTATTCCACTTTGAGTTCTGGATATCTGAAGAATGCCAGGCTGTTAATGTTAGCC TGAAGACTGATGTCTGGAGAACTGAGCTTGTGGCTGAGGGAGTTGATCCAAGACATCAAA CGTTTTCCTACTCCTCAAGGTTTAAGAAGCGTAGAAGGTTGGGAATGTTGGGAACCACAG CTGAGAAAATAAGCCATGTGCATCCACATATCATGGATTCAGATTCACCTGAAGATGCCC AGGCAGTGTCTGAAGGTGACTTTGTGCAGAGGGAGGAAGACGATATTTCTGCACCACGTG CTTCTGTTGATCCTGCCCAATCATTACATGATAGCAATCTTTCACCACCCACAGTACTAC AGTTTGGGAAAACAAGGAAACTATCCGCGGAGCGAGCTGATCCCAGAAACCGACAACTCC TGCAGAAACGTCAGTTTTTCCATTCTCACAGGGCACAGCCAATGGCACTGGAACAAGTTT TCTCGGATCGTGATAGTGAAGATGAAGTTGATGATGACATCGCAGATTTTGAAGATAGAC GGATGCTTGATGATTTTGTTGATGTCACGAATGATGAG
Homology of Contig U35_20039 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g13630.1 | 605 | 2e-120 | protein|ZOS9-03 - C2H2 zinc finger protein, expressed |
| Brachypodium v1_2 | Bradi3g03106.1 | 647 | 2e-120 | |
| Arabidopsis v10 | AT5G51230.1 | 631 | 5e-63 | | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=631 |