barSeed - Barley Seed Development Database

Probe CUST_33636_PI390587928

Source Contig U35_48078

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33636_PI390587928	Hv_44K_v2	AACGTTCGATTTGCCATGGTTAAATCCCGAATGTTCGGGATTTATAATTTCCGTACTTTA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361483	2224	7e-23	2132 - 2191	98	59 / 60	plus	ABC09320 ABC14510
Harvest35	U35_48078	458	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (458 bp)

>U35_48078 458 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGTACGGAAATTATAAATCCCGAACATTCGGGATTTAACCA
TGGCAAATCGAACGTTTTCGATGTGAATTCAAGCAGTGACACAAGGATGGCAAGATAGTT
GACACTCACGACCATTTGCTGTCAAAAAATAAACTGAAGCATGAAGTTGCCATCCTCGTG
TCACTTAAGCTTGTCATCGAAAACCTCCGAATTGCCATGGTGAAACCCCGAACTCGTTCG
GGCGTTATCATATTCCAAGAGATAATTATATGGAAGAAAAAGTGAAGTAATTCTACATCA
GATTGCAACGCTGCTTCTTGACCCGAGTAGATTCATAAATCATGGCGGTGGTCGCGATGT
GAGGTGGGTTGGACGAACGACGAGCAAACCCTCGCCTCCGTGTACACCTTTCCGGGCCTG
CAGAAATATCCTTGTTCCGGCGCGCAATGCGAGTCGTG

Homology of Contig U35_48078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None