barSeed - Barley Seed Development Database

Probe CUST_33622_PI390587928

Source Contig U35_48089

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33622_PI390587928	Hv_44K_v2	CAGAACTTGTGCCCAGCCATTTCATTAACATCATATACATATCTGATCTGATCCAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53532.1	2715	9e-22	1114 - 1168	100	55 / 55	plus	ABC13470
MLOC	MLOC_53533.1	5124	9e-22	1097 - 1151	100	55 / 55	plus	ABC13470
JLOC1	JLOC1_34404.1	4533	5e-22	3872 - 3926	100	55 / 55	minus
Harvest35	U35_48089	401	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (401 bp)

>U35_48089 401 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGATCAGATCAGATATGTATATGATGTTAATGAAATGGCTGGG
CACAAGTTCTGGCCTAAACATGGTGGCAGAACGAAATGGTGATAACATAAACATGGTGGC
AGAACGAAATGCCCTGTTTTATGTTCTGCCCTTCACTCGAGCCTGAGGATACAGATCGAG
GAGTTCAGGCACATCTCCCTTGTATTTGAGAATGTACCTCTCCACAAAAATGGCCTCCGG
CAGTCTCACTATGCCCACCATGTTCACCTTCCCGATGTCCACGCCCCTGGACCGCAGGGC
CTCGACGGCGCGGCACCGCGGCGCCATCCGCTCGTCGAGGCTCAGCGTCAGCAGCAGGGG
GTTCCTGACGATGCTCCCGGCGCTGCACCCGACGGTGGCCC

Homology of Contig U35_48089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None