barSeed - Barley Seed Development Database

Probe CUST_33603_PI390587928

Source Contig U35_7009

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33603_PI390587928	Hv_44K_v2	ATTTAGTATGGGCCACATCTAAGCATGATGCCTACCTAATATCGCATTACTCGGTGCTAC	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374448	1800	2e-24	624 - 683	100	60 / 60	plus	ABC25472
MLOC	MLOC_62420.1	1723	2e-24	1029 - 1088	100	60 / 60	minus	ABC28493
JLOC1	JLOC1_40848.2	1197	8e-25	638 - 697	100	60 / 60	plus
JLOC1	JLOC1_40848.1	982	8e-25	423 - 482	100	60 / 60	plus
Harvest21	ABC14872	691	3e-25	620 - 679	100	60 / 60	plus
Harvest35	U35_7009	691	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (691 bp)

>U35_7009 691 Hv_44K_v2
GACCTCTCCTCTCGGGTATCGGCGCCTTCTCGAGCTTTCGCACCGCCTAATTCCCAAACC
CGGCGCCGCCGTGTCACCCCTTCCCCGGCGCCGCCGGTCGCGCCCCCAGGCCTAAAGCGC
GCCACGTCGAATTCTTCTCCCCCTTCCGCCCCCCTCTGCCCGATTGGCCTGGCGTGGAGA
TCCACCCCCGCGGATTTTCTCTTCTTGGCCCGAGACATGTCTCACTATCAGGAGGACAAT
GTTGAGGACATGGAGGATGATTACGACATGGACGACCCGGTGGATGACATGGATGGTGAA
GATTTCCTAGGGCCGGAGGCTAGGGACGACTCTGATGACGAGGATGACGAGGATGCCCAA
TATAAGGCATCCGACACATCATCTGAAGAAGCAAGGCGTGGAAAAGACATTCAAGGAATA
CCATGGAATCGCTTGGAACTTACCAGAGAAGGATACAGGGAGACAAGATTATTACAGTAC
AAAAACTACGAGAACGTACCTAATTCTGCAGAAACAGCAATGAAGGCATGCAAATCTACT
GAGAAAGACGGAACATATTATGAGTTTAGGCAAAATACTAGATCAGTAAAATCTACTATT
CTACACTTTCAGCTGAGAAATTTAGTATGGGCCACATCTAAGCATGATGCCTACCTAATA
TCGCATTACTCGGTGCTACACTGGTCAGCCT

Homology of Contig U35_7009 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48964.1	447	3e-53	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g42960.1	448	8e-63
Arabidopsis v10	None