barSeed - Barley Seed Development Database

Probe ABC28493

Source Contig ABC28493

barSeed

Links

Affymetrix Source Sequence (1227 bp)

>ABC28493 1227
GGCTATCGTTTCCGTCGGAAAACCCACCGAGGTGATTTTACAAAAAAGCCCTTACTGTTT
ATGACATTAAACTCGTAGTATATATTAAATATTTTTTAAAATACTCATATCTTTTAAACC
GTAACTTCAAATTTAACATATTATACATGGAATTTGATTAGAAAAATATGTAGAATTTAA
ATGTGATATTATTTTATCTGTTAAACGTTTAATAAAAATACTATCTAGGGTGCAATCTTA
ATAAATAAATAATTATTCGTCTTTCTTTCATACCGGTACTCATCCGGGTTGGGAATGAAC
ACGTCAACAAAATCAGGATTAGAGATGAAACTGAAGGTCACTTGACTGATTATTTGTACG
TATTAAATCTACATGCAAGCCGTGTTAAAATAGAAGACCTGTGAAATTTTAAACTGCATT
TTTGTAGGATAAGACCATCTTTATTTGTATCGTAACTATAAATTCTCAAATTATAGACAT
TTTTTATAAATTAAGAGCGTGTGCCGTGTGGTATTTCTTTCTCCCGTTGCAACACATGGG
CCCTTTTATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTG
TAGTAATTCAAATTGCTGATGGACTTTTTTGCATCACAATTAATGCAGATTGTTAATTAT
TCATCGTTAAGTAATTACCAGTAATAATATAATTCAGATTGCCGATTTCTTGGTTTTGCA
CATATATATACACTATATTCATGCATGCATACATGCAGGTTGTGACCAACGGGTATCTGA
AGGCTGTCCAGCACCGCGCGGCCACCAACTTTGCCGAGCCCCGGCTGTCGGTGGCCTCGT
TCATTGTGCCGGCGGACGACTGCGTCGTCGGCCCTGCGGAGGAGTTCGTCAGCGAGGACA
ACCCGCCACGCTACCGCACCCTAACCGTCGGCGAGTTCAAGCGCAAGCACAACGTTGTCA
ATCTGGATTCCTCAATCAATCAGATCATTAACATCAATAACAACGAGAAGGGAATATGAA
GCAAAACCAGGAGAAGGAGGATTTGCATCACTTCCTCGATCGTTCAAGAAAGGCCAAGTG
ATGCCAAGTTTTATTCCAATGTCTCTCAAGTCGCGACGGGTATCAGTTACATCTAGCTGA
TACGAGATATTTAGTCGTGACATGTGATGAGATCGTACGTACCTGTCGTACGTGTTGGTG
ATACCAAGCAATAAAAATGTGACCAAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362435	2748	0.0	1537 - 2078	95	521 / 547	None	ABC14229 ABC19214 ABC28493
MLOC_75227.2	1324	0.0	840 - 1310	99	464 / 471	CUST_32926_PI390587928	ABC22416 ABC28493
MLOC_75227.1	1499	0.0	1003 - 1473	98	460 / 471	CUST_32926_PI390587928	ABC22416 ABC28493
MLOC_55772.1	767	1e-113	1 - 250	96	242 / 251	None	ABC28493
MLOC_81685.1	232	5e-98	1 - 232	95	224 / 237	None	ABC28493
MLOC_3644.1	181	6e-82	1 - 181	97	176 / 181	None	ABC28493
MLOC_2797.1	177	2e-76	1 - 177	96	170 / 177	None	ABC28493
MLOC_19963.1	819	2e-71	634 - 819	92	172 / 186	None	ABC28493
MLOC_65175.1	1520	3e-65	1298 - 1518	87	200 / 229	CUST_2887_PI390587928	ABC28493
MLOC_62420.1	1723	4e-59	1 - 134	98	131 / 134	CUST_33603_PI390587928	ABC28493
MLOC_59225.1	134	3e-55	2 - 134	96	128 / 133	None	ABC28493
MLOC_9093.1	118	6e-52	4 - 118	99	114 / 115	None	ABC28493