barSeed - Barley Seed Development Database

Probe CUST_334_PI415269222

Source Contig TA44772_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_334_PI415269222	Hv_44K_v2	ATAACATAGCACTCGAACGTGTAGAAAACATGTCGAGGCCTCTACTTGTTGTAATGGCCG	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71749.2	2638	2e-24	12 - 71	100	60 / 60	plus	ABC12692
MLOC	MLOC_71749.3	617	2e-24	11 - 70	100	60 / 60	plus	ABC12692
MLOC	MLOC_71749.1	3033	2e-24	2782 - 2841	100	60 / 60	minus	ABC02671 ABC12692
MLOC	MLOC_71748.1	4332	2e-24	4081 - 4140	100	60 / 60	minus	ABC12692
JLOC1	JLOC1_47702.2	962	8e-25	176 - 235	100	60 / 60	plus
JLOC1	JLOC1_47702.1	1820	8e-25	176 - 235	100	60 / 60	plus
Harvest21	ABC12692	1228	1e-23	1 - 57	100	57 / 57	plus	ABC12692
Harvest35	U35_19553	1274	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (804 bp)

>TA44772_4513 804 Hv_44K_v2
AACTCGATCGTGCTATAACATAGCACTCGAACGTGTAGAAAACATGTCGAGGCCTCTACT
TGTTGTAATGGCCGCGGCGGCGATCGTCGTCGTGGCCTGCTGTTTCGCGGCGTGTCCGGT
CGGCGCCGGCGCGAGCGCTGGTGGCTTCTACGAGAACTTCGAGGTGAAGTGGGGCACGGA
CCCGGACCCTGACCGGCGGGTGGAGATCGTCGACGGCGGGCGGCTGGTGACGCTCACCCT
CAACAACGTCTCCGGCTCCGGGTTCCAGTCCCGGGACGCCTTCCTCTTCGGCGAGTTCAC
CATGGAGATGAAGCTCGTGCCGGGCGACTCCGCCGGCACGGTCACCACCTTCTACTTGAC
ATCCAAGGACCCGACGGCGGTCGGGGACGGGCACGACGAGATCGACTTCGAGTTCCTGGG
CAACGTGAGCGGGGAGCCGTACCTGATGCAGACCAACGTGTTCGCGCAGGGGGTCGGGGG
CAGGGAGCAGCGATCCTACCTGTGGTTCGACCCGACAGAGGACTTCCACAACTACACCAT
CCTCTGGAAACCCTCTAAACATCATCTTCTCGGTGGACGGCGTGCCGGTGCGCGTGTTCC
GGAACCAGGAGGCGAACGGCGTGCCGTACCTGACCAGGCGGGCGATGAAGGTGCACGCCA
CCATCTGGGACGGCGACACCTGGGCCACGCGCGGCGGCCGGGTCAAGATCGACTGGGCGC
ACGCGCCCTTCGTCGGCTGCTACGGGACCTACGCCTACCGCGCCTGCGTTTAGGCGGGCG
GCAACGGGGACGGGGATAGAGGCC

Homology of Contig TA44772_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48160.1	294	3e-62	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi5g20718.1	317	6e-99
Arabidopsis v10	AT5G57540.1	284	2e-65	\| Symbols: XTH13, AtXTH13 \| xyloglucan endotransglucosylase/hydrolase 13 \| chr5:23302996-23304049 REVERSE LENGTH=284