barSeed - Barley Seed Development Database

Probe CUST_33461_PI390587928

Source Contig U35_46934

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33461_PI390587928	Hv_44K_v2	TCGCGATGAAGCTATTTGGATGCTGCTTATATTTATCTTTTGTGTTCTGTTAACCCCTCA	120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64590.1	1872	2e-24	837 - 896	100	60 / 60	minus	ABC09838
JLOC1	JLOC1_42428.1	1087	8e-25	192 - 251	100	60 / 60	plus
Harvest21	ABC47621	621	3e-25	121 - 180	100	60 / 60	plus
Harvest35	U35_46934	621	3e-25	121 - 180	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_46934 621 Hv_44K_v2
ACAGTGACAAAATAGACGATCCACCTGTCTCCAGTTTGACTTCTAATTTCAGGGAGTGGG
TGTCATCCAGCTAGTAGTGATTGACGAAAAATTGCATAGGATTCAGCTGATCATTGAGTC
TCGCGATGAAGCTATTTGGATGCTGCTTATATTTATCTTTTGTGTTCTGTTAACCCCTCA
TTTTGTCCTAAATATTTTGTAATAAGTTTCATCTCCTGTTCTATTTATATTGTGCTTATT
ATCTTACAGTGTGTTTGTTGCATCGTCTTATATGAAAAGTTTGTTAGATTCACATGTTAC
AATGTTTCCATTTATAGGGATTCCAGTATCAACTCGGTGATTTTTGCTTGAGGATTGGAA
AATGTGTTCCTAACAATACTGAAACACTGAGAGGAATCATGATGGAGGTAGAGTATTACC
CCCTATCTTCCATCGAAAAGTCCAGGGCCATTATGGTAGACTTCTTTGACATATGGCAGG
AAACGCTTGCAAAGAAGTCGCTGCCTGGTCGATTCATCCATGTGGAATCTAATTTCTCAG
AGTATGGTCTTTCGGATCACTACTCTTTCCAGCACACCGCAGTTCAGTACGCTACGTGCT
TGCAGCAACTCATGGCAGCTG

Homology of Contig U35_46934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27140.1	231	1e-64	protein\|expressed protein
Brachypodium v1_2	Bradi4g31500.1	226	1e-64
Arabidopsis v10	None