barSeed - Barley Seed Development Database

Probe CUST_33432_PI390587928

Source Contig U35_22991

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33432_PI390587928	Hv_44K_v2	ACCCAGGAACTTCAATTGTGAGCATTTGCATTTCAGTTTTATGCAGCTCTAAACTTTTTT	901	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.675	1.955	1.037	0.785	0.272	0.348
Raw	109.637	201.253	92.259	117.792	13.423	18.302

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365163	2196	2e-24	2108 - 2167	100	60 / 60	plus	ABC14141 ABC14502
JLOC1	JLOC1_49987.1	1252	8e-25	1115 - 1174	100	60 / 60	plus
Harvest21	ABC19738	786	3e-25	721 - 780	100	60 / 60	plus
Harvest35	U35_22991	967	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (967 bp)

>U35_22991 967 Hv_44K_v2
CTGAAGTCGTTCTTACTAGTGAGTACATTGATGAAATTCGTAATTTGATGCCTGAGCTTC
CAGAGGCAAAGCGTAGGCGCTATGAGAACATGGGACTCAGCATGCAAGATGTTATTTTCC
TTGCTAATGACGATAAGGTTGCTCATTTCTTTGATTCTACACTTGAGCATGGCGCTGATG
CAAAGCTAGCTGCCAACTGGATAATGGGTGATATTACTGCTTATCTGAAGGATGAAAAGC
TTTCTATTGATGAAAGTAAATTAACACCTCTGGAGCTTTCTGAAATGATTGCATACATAA
AGAATGGAACTATCAGTGGGAAAATTGCCAAGGAGATTGTGGTTGACCTCATTGCCAAAG
GCGGGACTGTTAAGTCTGTGATAGAGGAGAAGGATTTGGTTCAGATCGCAGATCCAGCAG
CAATTGAGGCCATGGTAGATCAAGTACTCGCTGACAATCCGAAGCAACTTGAGCAGTATC
GGGCTGGGAAAACCAAGTTGCAGGGGTATTTTGCTGGTCAGGTGATGAAAGCATCAAAGG
GTAAAGCAAGCCCTGTTTTGTTGAACAAAATCCTGGGGGAGAAGCTGAAGGGCAGCTGTT
GAGGCTTTTTTGGGCGCATCAAGTGGTCCTTGATGACTGGAGCATCAAACGAAAGCAAAA
TCCTGCAGCGAGAACTACATTTTTAGGGTGAAAACATCTCCGATTCTGGTTTTTGTAGGC
GTAGTCCTTGCTTTGAATTTTGGGATGGATCTTGTTTCCGCCTCGTATTTTGTAAGAGAA
AACAACCCAGTTCACATAGTACTGTGTTTGAGCTGATAATAAGAATGGAGTGGTCTGGTG
TACAGATGAATTATCTACGTAGCTTTACATGTTACTATGTACCCTTTTTTTATCGTTTTA
GACCCAGGAACTTCAATTGTGAGCATTTGCATTTCAGTTTTATGCAGCTCTAAACTTTTT
TTTTTTC

Homology of Contig U35_22991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34210.2	545	5e-115	protein\|aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Brachypodium v1_2	Bradi4g16830.2	505	4e-118
Arabidopsis v10	AT1G48520.1	550	5e-89	\| Symbols: GATB \| GLU-ADT subunit B \| chr1:17940185-17942540 FORWARD LENGTH=550