barSeed - Barley Seed Development Database

Probe CUST_33431_PI390587928

Source Contig U35_22992

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33431_PI390587928	Hv_44K_v2	CGTTGGATGAACCTGTACAGCCTTTAATAAATACAGTTGTGTATGATTTTCTGCTAATGT	912	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359038	2363	2e-24	2280 - 2339	100	60 / 60	plus	ABC03066 ABC03067
MLOC	MLOC_74693.1	1363	2e-24	1212 - 1271	100	60 / 60	plus	None
JLOC1	JLOC1_49802.2	1266	8e-25	1131 - 1190	100	60 / 60	plus
JLOC1	JLOC1_49802.1	1321	8e-25	1186 - 1245	100	60 / 60	plus
Harvest35	U35_22992	988	3e-25	913 - 972	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_22992 988 Hv_44K_v2
TCCTGGTGGAGTTAACAATCTGTTATTGAGCAAGAGGCTCGGGTATATGCCCAGCAGGTG
AAGGAAGAAGAAGCCCGATTAATGGTGATGGACTCACTTAAGATGTTCGCTGGTTTACCA
TCTGAGGAAAGTTCTGTAGGATCTTTCAGAGAGTACCAGGATTTCCAGCTTAACCATGTG
CAGGAAACAACTGAAAACAACATGGCCTTGATAGAACTAGAGGCCGAGAAGCATAGACTG
GAGAAAGAGCTGAAAGACCAGGAACGGAGACTTTTCATTCTTACTAAGAAGATTGAAAGA
TCCAACGAAGCGCTTGCAAAGCTTCATAATTCTTGGAACCCTTCAGAGCAATCTGCAGAT
AAAGAGCTCTTGACAGAGGAGGAAAGAATGATATTCCGAAAGATTGGCCTAAAAATGGAT
GAGCATGTGCTCCTTGGAAGACGTGGTATCTTTGACGGTGTAATTGAAGAGATTCATCAA
CACTGGAAACATAAAGAGATTGTGAAAGTAATTACCAAGCAGAATCAAGCTTACCAAATA
ACATACACATCAATGCTGCTTGAGGTTGAGACAGGAGGAATGCTAATAGCAACACAAAAG
CTCACAAATAGCCATGCCATAATACTTTACCGTGGGAAGAATTATCATCGCCCAACAAAA
TCATCACCCAGTAATCTCCTGACAAAGAGAGAGGCATTACGGAGATCAGTTGAGGTTCAA
TGACGAGGGTCAATGAAATACTACGTTTGGGAAAGACACAAGTCTATTGAGGATTTGCAA
TGGAGACTGGCAAATGTGATAACGAAAATCAGGAAACTAACCGTATGATTCATGGAGATT
ATTGATAGTATGCAAATGTCCAATATCTTTGATAGTCTTTCTATCTAGCTTTTCATTTTT
TTTGTCTCATTGCGTTGGATGAACCTGTACAGCCTTTAATAAATACAGTTGTGTATGATT
TTCTGCTAATGTATATGTTAGAACTTTT

Homology of Contig U35_22992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27150.1	742	4e-129	protein\|chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g21852.1	731	7e-155
Arabidopsis v10	AT5G16180.1	720	7e-64	\| Symbols: CRS1, ATCRS1 \| ortholog of maize chloroplast splicing factor CRS1 \| chr5:5279884-5282898 FORWARD LENGTH=720