barSeed - Barley Seed Development Database

Probe CUST_33382_PI390587928

Source Contig U35_23956

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33382_PI390587928	Hv_44K_v2	AATTCTTGCGACACAACTACCAGCAAAATTTGGAGACCGCATGGATTCCGCTCTATACTC	399	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361798	2188	2e-24	393 - 452	100	60 / 60	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.4	1845	2e-24	382 - 441	100	60 / 60	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.3	2330	2e-24	1810 - 1869	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.1	2292	2e-24	1716 - 1775	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.2	2183	2e-24	1702 - 1761	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.6	1069	2e-24	522 - 581	100	60 / 60	minus	ABC20479 ABC21055
MLOC	MLOC_1137.5	549	2e-24	408 - 467	100	60 / 60	minus	ABC20479 ABC21055
JLOC1	JLOC1_703.3	2102	8e-25	407 - 466	100	60 / 60	plus
JLOC1	JLOC1_703.2	1639	8e-25	61 - 120	100	60 / 60	plus
JLOC1	JLOC1_703.1	1970	8e-25	173 - 232	100	60 / 60	plus
Harvest21	ABC20479	601	3e-25	400 - 459	100	60 / 60	plus	ABC20479
Harvest35	U35_23956	601	3e-25	400 - 459	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_23956 601 Hv_44K_v2
CCCAGTCCGTGGAGAGGAGGGGAACAGGTGGACGTCCATGGACGCCACGGCGGATCCCCT
GCTGCCCCAACCGGCAGCCGCCGTGGACCACCTCGGCCGCCCAGTCTCCCGCCTCACCTC
CGGCAGTTGGCCTGCCGCGTTCTTCATCATCGGCGTGGAGATCTCGGAGCGGTTCGCCTA
CACCGGCATCTCAGGGAACCTCATCACCTACCTCACCGGCCCGCTGGGGCAGTCCACGGC
GTCCGCCGCCGCGACCATCAACGCGTGGAGCGGCGTCGCGCTCCTGCTGCCGCTGCTCGG
CGTGGCCGCCGTCGCCGATTCCTGGCTCGGCCGTTACCGCACCGTAGTCTGCGCCTCTCT
GCTCTACATCCTGGGCCTGGGCATGCTCACACTGTCATCAATTCTTGCGACACAACTACC
AGCAAAATTTGGAGACCGCATGGATTCCGCTCTATACTCGACTTCGGCTGCTCATTTACC
CTTCTTCTACATCTCCCTGTATATGGTGGCCTTTGCTCAAGGTGGGCACAAACCTTGTGT
GCAAGCATTTGGGGCAGACCAATTTGATGAGAACGACCTCTAAGAATATGNTCCGAGGGG
G

Homology of Contig U35_23956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65200.2	321	3e-70	protein\|proton-dependent oligopeptide transport, putative, expressed
Brachypodium v1_2	Bradi2g56387.2	551	2e-78
Arabidopsis v10	None