- Probe CUST_33358_PI390587928
- Source Contig U35_47919
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33358_PI390587928 | Hv_44K_v2 | CCACCGTAGATCTTTCTGTAATAACTTGATGACAACTTCGTAGCTTAAGTCCATCTTTTA | 52 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.225 | 1.203 | 1.089 | 1.173 | 0.540 | 0.526 |
| Raw | 4329.007 | 6682.177 | 5307.277 | 8927.750 | 1461.016 | 1550.744 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355696 | 3670 | 2e-24 | 3551 - 3610 | 100 | 60 / 60 | plus | ABC02318 ABC13844 ABC17852 ABC33956 ABC41122 ABC44374 ABC44969 |
| MLOC | AK371218 | 760 | 2e-24 | 636 - 695 | 100 | 60 / 60 | plus | ABC33956 ABC44374 |
| MLOC | MLOC_61892.1 | 848 | 2e-24 | 229 - 288 | 100 | 60 / 60 | plus | ABC33956 ABC44374 |
| JLOC1 | JLOC1_40468.1 | 502 | 8e-25 | 229 - 288 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49487 | 583 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC44374 | 519 | 3e-25 | 82 - 141 | 100 | 60 / 60 | minus | ABC44374 |
| Harvest21 | ABC33956 | 714 | 3e-25 | 73 - 132 | 100 | 60 / 60 | minus | ABC33956 |
| Harvest21 | ABC02317 | 1255 | 3e-25 | 1113 - 1172 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02316 | 2451 | 3e-25 | 2285 - 2344 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47919 | 583 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_38118 | 714 | 3e-25 | 73 - 132 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14840 | 2451 | 3e-25 | 2285 - 2344 | 100 | 60 / 60 | plus |
Contig Sequence (583 bp)
>U35_47919 583 Hv_44K_v2 AATAATAGTAATGAAGATGGTTCAAAAGTATTGCTTTGACAGAATATATAGATAAAAGAT GGACTTAAGCTACGAAGTTGTCATCAAGTTATTACAGAAAGATCTACGGTGGGCGGCAGC ATTTATACCTCAAAAGTTGCTGTCTAAGAGAATGGGTCTTTCATGGTTGGGTTCAAGCAA TTGGAGTTTGCAGGCTTATTGGAAACAGAAGGCATGTCATCAAAAGTGCTAGGCATTGGT GGAAGCGATCCACTTGCTTCAAAAGTTGATTGAGTAGCACCATCACCGTAGTGACTGCCA TTAGTTGATTGATCCAATGGGTACTGCAAAAACTGATTGTTTGGCACAGACAAATCATAG GAGAAGGTTCCACCAGTCAAATCATAGGAGAAGGTTTCCCCAGAAAAATCATAAGAGAAG GTTTCCCCAGGAGCAAACAGATCATCCAGCCCTATATAATCATCATCCATAGCAAATCCA GAGTTTGATTGCTGGAAATCGTTTTCAGTAACACCCACGTCGCCAGCAGGGAAGTTTACA TTAGACATATCCNCTGACTGGGCAGGTCCTGCTAATTGATCAT
Homology of Contig U35_47919 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |