barSeed - Barley Seed Development Database

Probe CUST_33332_PI390587928

Source Contig U35_11996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33332_PI390587928	Hv_44K_v2	TGTAACAATCTTGGCCAACCGCTCTTTATATGTGGACTTTACTCTTCCCTATACGGAGTC	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369503	2975	2e-24	1653 - 1712	100	60 / 60	plus	ABC23499 ABC33963
MLOC	MLOC_5097.1	1490	2e-24	29 - 88	100	60 / 60	plus	ABC23499 ABC33963
JLOC1	JLOC1_3250.1	1365	8e-25	25 - 84	100	60 / 60	plus
Harvest21	ABC23857	680	3e-25	595 - 654	100	60 / 60	plus
Harvest35	U35_11996	680	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_11996 680 Hv_44K_v2
TTAGCATCAGCTGCAGAGAAGGCTGGATATGCGAGATTTTCGGCCGTCTGTAACAAAGAG
TGGGTCCACTGACTTTGACAGAATAGATACTTCAAAGGCTGCTGAAAAACTGCGAGGTGC
ACTACTGAAGGTCAACTTTTCGGGCATGAGCGGAAATTTTCGTATTGAAAACACACAGTT
AGTATCATCAATTTATACGATAATCAACATTGTTGGTCAGGAGAGAAGAGAAGTTGGTTT
TTGGACTCCAGAATTTGGCATCTCTAGTAGTCTAAATATGAAGTCTAATATTAACATCAT
ATGGCCAGGAGACAATAAAACTGTTCCTAGAGGCTGGCTATTGCCGAGGAATAAAATTCT
CACAATAGGTGTACCTGCAAATCCTGGGTTTGGCCAATTTGTAAGATATAAAGATGGCCC
CGAAGGCAAAAAAGGGTTCTGCATCGAAGTTTTTGATGAAGTAGTTGCTAATCTACCCTA
CGAAGTACCATATACCTACCGTGGATTTGATGACGGGCAAGGAAATAGTAATGGAACATA
TGATGAACTTATCTACAAGCTTTATCGTAAGGAATTCGATGCAGTGATAGGTGATGTAAC
AATCTTGGCCAACCGCTCTTTATATGTGGACTTTACTCTTCCCTATACGGAGTCAGGGGT
GCGCATGCTGGTTCCGGTCC

Homology of Contig U35_11996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26160.2	705	2e-87	protein\|glutamate receptor, putative, expressed
Brachypodium v1_2	Bradi4g30880.1	985	1e-87
Arabidopsis v10	AT2G29120.1	952	6e-52	\| Symbols: ATGLR2.7, GLR2.7 \| glutamate receptor 2.7 \| chr2:12511479-12515893 REVERSE LENGTH=952