barSeed - Barley Seed Development Database

Probe CUST_33249_PI390587928

Source Contig U35_7916

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33249_PI390587928	Hv_44K_v2	GAGGCAACTGTCATAAGAATTAGGTGACTTGATGATCATTTCTCCTAGTTTAGTGTACAT	746	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355234	3630	7e-23	3479 - 3538	98	59 / 60	plus	ABC05214 ABC10333 ABC16382
MLOC	MLOC_13938.1	2839	7e-23	1390 - 1449	98	59 / 60	plus	ABC16382
JLOC1	JLOC1_9483.1	2367	4e-23	1388 - 1447	98	59 / 60	plus
Harvest21	ABC16382	848	3e-25	43 - 102	100	60 / 60	minus	ABC16382
Harvest21	ABC41010	652	1e-23	104 - 163	98	59 / 60	minus
Harvest35	U35_7916	909	3e-25	747 - 806	100	60 / 60	plus

Contig Sequence (909 bp)

>U35_7916 909 Hv_44K_v2
TGCAGNGAATTCGGTCACGAGGGCCCAATGACACATACAGTGAGGATATCTATTGGCTCC
AACTGCGCTCCCAGCAGCTGACAACGATGAGCGGCAATTCACCTTGCGTCCCGTAGTGGA
CATACACTTAAGGTTGACGGACCTCTAGATGGTGTACACCAATGACCCGGTCTCGGTTGA
GAACTGCATCAACGCTATGGAGCAGTCGTATGTTGAGGACAAACACAAAATGGTTGGCTT
CAACCTCCAATACACCAGCGGTCATGCCAAGTATGATCAAAAGGCTGTCATTGCCCAGTT
GTGCGTGTGCCATAACATCCTTGTCTACCACTACTGTCTGGCCACAAGGGCTTGCGGTTT
CGCCAGGTTTCTCAACAGCACCGACTACAGGTTCGTTGTGATGGACACCACCAACGATGT
AAAGATGCTCAAGACTTTGAGCATGGCCTGCTAGAAACTTCTCGACATCAGGAACAGTAC
AGAGTCTGGGGAGAAATAAGGAGAAGGACTCCCTATTTGACCTCGCCGTTGCCATCATTG
ACCCCTACTATAGAACATGAGGGATGATTGCAACAAGAACAAGGTTGCCTAGGACAGGGC
CTATATGCAAAGACCATATGAAGGTCACGTCAAGTATGCGTCCAAGGATGGGTACACATG
CTACAAGATGTACACGCGGATCATTGACATGGAGAAGTGCCTCTGTCCTACAAACAGCGA
TGGATTGAGGCACAAGTAGAGCATTGGAGGCAACTGTCATAAGAATTAGGTGACTTGATG
ATCATTTCTCCTAGTTTAGTGTACATATAATTGTTTATTGAGGTGTGCAAATGTTATGTG
TAGTCAGTTATGTAATTGGATGTTTAATTTGATTATGCAATCATGTTCTTATAAAAAAAA
AAAAAAAAA

Homology of Contig U35_7916 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None