barSeed - Barley Seed Development Database

Probe ABC05214

Source Contig ABC05214

barSeed

Links

Affymetrix Source Sequence (1695 bp)

>ABC05214 1695
GCCTCTGTATCCTGCACACACCGCCACCGATCACTCGCCGGAGCCCCTCCCCCAATGGCC
GCCGCCGCCGCCGCGATCGCGTGATGGCCGACCCAGCCGCTCGCCGAAGATGGACGAAGC
CGGAAGGGCCTCCGCTCCCGCAGTGGTGACGGTCACGGCCTCCGCCGCCGCCCCCTCGCC
TCCTCCTCCCCCGCCCCCCGCCACGGCCGCCGCCGCCGCCGCCGACCCGCCATCGCCCGA
CCCGGACGCCCTCTATGAAGAGGGAATGTGGCAGCAGATGACCATGAACAGCGGTGTCAC
TATGCAATCTGGGCCATATCCTGTGCGGCCAGGGGAGCCGGACTGCACCTACTACCTCAG
GACTGGATTGTGCAGGTTCGGCATGAGCTGCAGGTTCAATCACCCTCAGGACAGGAATAC
GGCTATTGCCTCTGCCAGAATGAAAGGAGAATATCCTGAGAGGGTGGGACAGCCTGAATG
TCAGTACTATCTGAAGACTGGAACATGCAAGTTTGGGCCTACGTGCAAATTCCATCACCC
TAGAGAAAAGGCTGGAATCGCAGGAATGGTGCAGCTAAATGCATTGGGATATCCACTTCG
ACCGAATGAAAGGGAGTGTGCATACTACTTAAAAACGGGACAGTGTAAATATGGGAATAC
ATGTAAATTTAACCATCCAGAAATTTTCAATGCGGTGGCTTCTTCACGTGGTTCCCCTAT
TTATCCTCCTGTACATACCTCTGGAAGCACTGGTCCACATTCCTATACTGGAACAATGGC
AAGTTGGACTTATCCAAGAGGTTCTTTCATTCCAAGCCCTAGATGGCAAAGTCCTTCAAA
CTATACACCGATGATTGTACCGCAGGGTCTTGTTCAAGTACCAAGCTGGAACTCATATCC
TGGGCAAATGGTACCTGTTTCATCTCCTGAGAGTCGACTACAGTCTCCAGGAGCTCAACA
ATACTATGGAACTTCTCGACAAGGTGAAGGCAGTGCAGGAAATCAGGGAATGCAATCACC
CTACAGATCCAGTTCATTTCCTGTACCTCAGTATGCACTGCAGAGAGAGAATGTATTTCC
TGAGAGACCTGATCAACCGGAATGCATATACTACATAAAGACTGGAGACTGTAAATTTGG
TGCAGTTTGCAAATTCCATCATCCCCGTGTGCGTTCACAGCCTCCCCCAGACTGTATCTT
GAGCCCAATGGGTCTTCCATTACGCCCAGGGGAGGAGCTCTGCAAGTTCTACTCTCGCTA
TGGCATCTGCAAGTTTGGCGTAAACTGCAAGTTCGACCATCCGATGGCGGCCCCGATGGG
GGTCTACGCGTACGGCTACTCCGCGTCGGCGTCGCCCAACGCGCCCATGGCTCGCCGTCT
CCTGGAGTCGCCCTCCGGGTCTGCGTACGCGTCCTAAGGCTCCCCGGCAATTTGACCTTG
ATTGATCTCGATGATGATGTATAAAAAGCCATCGCGCGCCGTCCGTCCTCGGTCGCGCCC
CGCGAATGTTCTCTCCCCCTAACTCCCCCGGAATCAAGTTCTGTAAAAATCGAGTTTGCT
ACCAGAGATGTACAGTTATTTTTGTTAATGCGGGTCCTTGGATGGATGGATGGATGGAGA
AGCCATTTGCTACCGAATGAAATAATGGTTGAATGCAGTCGTTGGAAATGTCGGCATTTT
TTTTCGTCAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_37645.1	1510	0.0	9 - 1510	99	1500 / 1503	CUST_29326_PI390587928	ABC05214
MLOC_37645.2	1979	0.0	1271 - 1979	99	707 / 709	None	ABC05214
MLOC_37645.3	1204	0.0	391 - 1038	99	647 / 648	None	ABC05214
MLOC_56001.1	891	2e-93	6 - 192	100	187 / 187	None	ABC05214
MLOC_35196.3	1115	3e-76	345 - 512	98	164 / 168	None	ABC05214 ABC10333
AK355234	3630	1e-74	250 - 421	97	166 / 172	CUST_30316_PI390587928 CUST_33249_PI390587928	ABC05214 ABC10333 ABC16382
MLOC_35196.2	904	1e-74	126 - 297	97	166 / 172	None	ABC05214
MLOC_35196.1	568	5e-74	126 - 296	96	165 / 171	None	ABC05214