- Probe CUST_33120_PI390587928
- Source Contig U35_38591
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33120_PI390587928 | Hv_44K_v2 | CTGAGATATATCCTTCGGATATCGAACCTCGTTTTTAATAATGCTGAACTTAGCTTTCAT | 23 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73299.2 | 1210 | 3e-22 | 1066 - 1124 | 98 | 59 / 60 | plus | ABC00410 ABC00417 ABC00940 ABC00976 ABC31967 |
| MLOC | MLOC_73299.1 | 1497 | 3e-22 | 1331 - 1389 | 98 | 59 / 60 | plus | ABC00410 ABC00417 ABC00940 ABC00976 ABC31967 |
| JLOC1 | JLOC1_48789.1 | 1788 | 1e-22 | 1338 - 1396 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50012 | 175 | 5e-23 | 50 - 108 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC00417 | 1756 | 5e-23 | 1681 - 1739 | 98 | 59 / 60 | plus | ABC00417 |
| Harvest21 | ABC00354 | 1433 | 5e-23 | 1217 - 1275 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00990 | 1395 | 2e-21 | 133 - 191 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00940 | 679 | 2e-21 | 141 - 199 | 97 | 58 / 60 | minus | ABC00940 |
| Harvest35 | U35_38591 | 620 | 3e-25 | 24 - 83 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14099 | 1474 | 5e-23 | 1243 - 1301 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14090 | 1756 | 5e-23 | 1681 - 1739 | 98 | 59 / 60 | plus |
Contig Sequence (620 bp)
>U35_38591 620 Hv_44K_v2 TTTTTTTTTTTTTTTTTCTTTTTATGAAAGCTAAGTTCAGCATTATTAAAAACGAGGTTC GATATCCGAAGGATATATCTCAGGACTCTGAAAACCAAACAATGATACTGGTAAGCGGGA CGCCCAAACGGGCCACAGCAACCCAACGCAGATCAATCAGTACTTGTAGTCCTTGACGTG AAGGCTCTCGGAGGGTGCGGACGGTGTACTCAGCAATGACCTCAGGGGTCACCTTCTTGG CATCAGAACCAGGGGTGACCATGTTGGGCTTCAGGAATGTGCCCTCAAGGAAGACATGCT GGTCGTTGAGGGCCTTGTAGCAGGCAGCAAGGACGATCTCAGTGACGTAGGCACAGCGGT CAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACGATGGGCACCAGACCGTTCT CCTGGCAGATGATGGCATAGCGAGCCAGACCCTGAGCATTCTGGTCGATGGAGAGCTGCG ATGGCTCGGTGGCACCGATCTTGAGGACCGCACGCCACTTGGCGAAGCGGGCACCAGCCT CGTAGTACTTGGCGCAGCGCTTGCCAAGGTCATCAAAGCCCTGNGTGGTGGTCTCACCAT TGGTTCCAGCGAGCTCGATG
Homology of Contig U35_38591 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g33380.1 | 359 | 3e-86 | protein|fructose-bisphospate aldolase isozyme, putative, expressed |
| Brachypodium v1_2 | Bradi2g58050.1 | 359 | 2e-86 | |
| Arabidopsis v10 | AT4G26530.1 | 358 | 2e-77 | Aldolase superfamily protein | chr4:13391566-13392937 FORWARD LENGTH=358 |