barSeed - Barley Seed Development Database

Probe CUST_33088_PI390587928

Source Contig U35_9529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33088_PI390587928	Hv_44K_v2	GCCATGGGAACCTTGTCAAAATATCAAATAATAATAGGTGCTAGAAGACCAACTAAACTA	876	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76091.2	993	7e-23	883 - 942	98	59 / 60	plus	ABC21235
MLOC	MLOC_76091.4	1991	7e-23	1875 - 1934	98	59 / 60	plus	ABC12150 ABC21235 ABC36731
JLOC1	JLOC1_50751.2	935	4e-23	819 - 878	98	59 / 60	plus
JLOC1	JLOC1_50751.1	5806	4e-23	5690 - 5749	98	59 / 60	plus
Harvest21	ABC21235	953	3e-25	877 - 936	100	60 / 60	plus	ABC21235
Harvest35	U35_9529	953	3e-25	877 - 936	100	60 / 60	plus

Contig Sequence (953 bp)

>U35_9529 953 Hv_44K_v2
ATGGAATTAAGAATCCACTGAACAGTGTGTTTGCTCACAGCAGAATGCTTTGAAATAATG
ATGCATCATTAAGGACTACTTTGTTTGAATGAATAATTTTTCTTTGTAAGGGCCCTAGAA
AGAGGCAGAGGGTTTCACATCTTTTCGTCAAACTATCCTATTATTTGCAACTGTATGTCC
TTTGTTATGCATGTTCTTTTTCTTCTCAGCATTCCCATTTACTCTTAACTGCATTTTATG
TTGCGGAAGGTCTTACATTCACGCATTTGCTGCACTATGGCAACACAAGCATCAGTAATA
GTAATAATTACATTCGGTATATAATGTATTCATTATATATTTATTTAATCTACCATTCTA
TTTTTCCTATACACTATGTTCAGTGTAATCTGCAACATTAACCCTGTTTTTATTTGGCTT
GCAGTGACTCCTTTTATGTGAAGTGAACAAATGTCAATTGCTTCTTTCATTGCCAGTAAT
ACAGCCATCAGTGCAGTGTTCCAAATTAACTTCTGAATACAGTATATATGTTTCCGTTGT
ATGTTGATTATAATTATGGTTTTCTGAATGGCTATGGTGATTTCCGCCCCTTGGTCTCTT
TCAACATATCCTGAGGTAGACATTCACATCTCTTGGTTGATTCCATTCAACTTTGCCCAG
TTAGACAGTTAGTCGTTAAACTAGGAGGCCTTGCTCTGCAGCAAGTTACCAGTTGCGGCT
ATTTGTTGCTGGGCGTAGAGAGAAAGAAGTTTTATTCCTTATGGTACTACCTGAAGCATT
GTCCAACTTCGGTGATTCATGGTCCGGTACATCTGAACCATTCATTCAAGTAATACTCCA
AAAAAATTCTCCACTTCTAGACGATGCCCGCGTGTTGCCATGGGAACCTTGTCAAAATAT
CAAATAATAATAGGTGCTAGAAGACCAACTAAACTAATGCAAAAAAAAAAAAA

Homology of Contig U35_9529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None