barSeed - Barley Seed Development Database

Probe CUST_33075_PI390587928

Source Contig U35_9545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33075_PI390587928	Hv_44K_v2	AAGGCTCAAATGTATATTTGTCAGAAATCAGATTTGTTGAAGTTAGGAGCTGTTCGGCAA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54194.1	2374	7e-23	1077 - 1136	98	59 / 60	minus	ABC18508 ABC23547 ABC24266
MLOC	MLOC_54194.2	2557	7e-23	1077 - 1136	98	59 / 60	minus	ABC18508 ABC23547 ABC24266
JLOC1	JLOC1_34869.1	1378	4e-23	1250 - 1309	98	59 / 60	plus
Harvest21	ABC24266	681	3e-25	16 - 75	100	60 / 60	minus	ABC24266
Harvest35	U35_9545	683	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_9545 683 Hv_44K_v2
CTGTAACCTATATTGAAGGTGGGAAATCTATTGATTCCACACCTCCAGTTGTCAAATTCG
GAGGCACTTTGAGGAGCCTCACTACTGAAGGACTTTATCGGCTACAGAAAAGGCTTAAGG
AGGTAGTAGAAGGGCAGGCAGCTGTACATAGATGCATGGGAGTTGCGGAGATACTGGGAG
CTCCCTCACACCCAATGTATCCCGCCGTCGTCAATGATGAGAGACTGCACCAGCATGTAG
AGAATGTGGGCAGAAGTGTGCTTGGTCCAGACAAGGTGAAGCCCGGACAGAAGATCATGG
CAGGGGAAGACTTTGCATTCTACCAACAGTTAGTTCCTGGCGTTCTGTTTGGTATCGGTA
TTAGAAATGAGAAAGTCGGCTCGGTCCACTCCGTTCACAATCCGCATTTCTTCGTCGACG
AGGATGTCCTTCCAATTGGGGCTGCATTGCATACTGCCACCGCAGAAATGTATCTTTCTG
GGCGTTCCATTCAAAATGAAGTTGGAAGCCTGCATTCGCTGTAATGCTCTTTGGATGGAG
GATTTGAATGTATATTATGTATGTCAAAGATGTTTCAAGTCTAGTTGTATGATTGTGTTC
AGTTGTTTAAGGCTCAAATGTATATTTGTCAGAAATCAGATTTGTTGAAGTTAGGAGCTG
TTCGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44110.1	427	3e-90	protein\|hydrolase, putative, expressed
Brachypodium v1_2	Bradi5g16000.1	428	1e-99
Arabidopsis v10	AT5G54140.1	428	7e-59	\| Symbols: ILL3 \| IAA-leucine-resistant (ILR1)-like 3 \| chr5:21965833-21967834 FORWARD LENGTH=428