- Probe CUST_32985_PI390587928
- Source Contig U35_30675
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32985_PI390587928 | Hv_44K_v2 | CCGGCGCGTCCATGAACCCCGCCGTCTCCTTCCGCCCCGCCCTCGTCAGCTGGGAGTGGG | 437 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.182 | 0.345 | 1.374 | 1.665 | 1.152 | 1.011 |
| Raw | 714.273 | 2068.942 | 7353.377 | 13444.870 | 3420.570 | 3236.887 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_73301.3 | 1632 | 7e-23 | 327 - 386 | 98 | 59 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
| MLOC | MLOC_73301.2 | 1586 | 7e-23 | 530 - 589 | 98 | 59 / 60 | minus | ABC01309 ABC36917 ABC37234 |
| MLOC | MLOC_73301.1 | 1909 | 7e-23 | 553 - 612 | 98 | 59 / 60 | minus | ABC01308 ABC01309 ABC36917 ABC37234 |
| JLOC1 | JLOC1_48792.1 | 1925 | 4e-23 | 1133 - 1192 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC30692 | 497 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43351 | 423 | 1e-23 | 243 - 302 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01320 | 730 | 1e-23 | 329 - 388 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01313 | 422 | 1e-23 | 247 - 306 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01306 | 1097 | 1e-23 | 661 - 720 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_30675 | 497 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14116 | 730 | 1e-23 | 329 - 388 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14112 | 720 | 1e-23 | 540 - 599 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14110 | 1129 | 1e-23 | 689 - 748 | 98 | 59 / 60 | plus |
Contig Sequence (497 bp)
>U35_30675 497 Hv_44K_v2 CTTCTTCTCTAGCGAGCTAGGCTTGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCG TGGGGAGCCACCGGGAGGTGTACGAGGTCGGCGCCCTCAGGGCGGGCACGTGAACCCGGC GGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGGCCTGCTCTACTG GGTGGCGCAGCTGCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTCTCCACCGGCGG GCTCCCCACCGGCACCTTCGGGCTCACCGGCATCGGCGCGTGGGAGGCGGTGGTCCTGGA GATCGTCATGACCTTCGGGCTGGTGTACACGGTGTACGCCACCGCCGTCGACCCCAAGAA GGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCT CGTCGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTCCGCCCCGCCCT CGTCAGCTGGGAGTGGG
Homology of Contig U35_30675 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g05290.1 | 251 | 7e-70 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g75290.1 | 251 | 1e-70 | |
| Arabidopsis v10 | AT3G26520.1 | 253 | 7e-59 | | Symbols: TIP2, SITIP, GAMMA-TIP2, TIP1;2 | tonoplast intrinsic protein 2 | chr3:9722770-9723703 REVERSE LENGTH=253 |