barSeed - Barley Seed Development Database

Probe CUST_32937_PI390587928

Source Contig U35_25106

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32937_PI390587928	Hv_44K_v2	ATTCACCAAGCAGAGCAGAGCAGAGCAACACGAGAGGAAGAGCAGCAATGGCCGTCTCCA	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69899.1	2211	2e-24	153 - 212	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
JLOC1	JLOC1_46346.1	2166	8e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_25106	436	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (436 bp)

>U35_25106 436 Hv_44K_v2
ATCACCATTCACCAAGCAGAGCAGAGCAGAGCAACACGAGAGGAAGAGCAGCAATGGCCG
TCTCCAGCAGCTCGTCGCTTCTCCCTCGCTGTCTCCTCGCCGCGGCGCTGGCCCTCTGCG
CGGCGGCGACGATGGGCGCCGCCCAAGCCGTCACCAGGAAGTACCACTTCGATGTGGGAA
TGACGAGCGTGACGCGGCTGTGCGGCACCAAGAGCATGGCGACGGTGAACGGACAGTTCC
CGGGGCCTACGCTGTTCGCGCGGGAGGGCGACCACGTGGAGGTCGACGTGGTAAACAACT
CCCCCTACAACATGAGCATCCACTGGCACGGCGTGCGGCAGCTGCTCAGCGGGTGGTACG
ACGGTCCATCCTACGTGACGCANTGCCCGATACAGCCCGGCCAGAGCTACGTCTACCGGT
TCCAGATCGTCGGGCA

Homology of Contig U35_25106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g23350.1	578	1e-52
Arabidopsis v10	None