barSeed - Barley Seed Development Database

Probe CUST_32931_PI390587928

Source Contig U35_13134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32931_PI390587928	Hv_44K_v2	CGACCCTGATAAGCTGGTCTCTGACTTCGTCCAAGCGTCAACCGTGTCGTCGCGCTTCCG	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37433.1	1909	2e-24	293 - 352	100	60 / 60	plus	ABC21200 ABC34548
MLOC	MLOC_37433.2	1806	2e-24	292 - 351	100	60 / 60	plus	ABC21200 ABC34548
MLOC	MLOC_71446.1	1773	3e-21	1328 - 1387	97	58 / 60	minus	ABC21200 ABC34548
JLOC1	JLOC1_24242.2	1634	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_24242.1	1738	8e-25	289 - 348	100	60 / 60	plus
JLOC1	JLOC1_47486.1	1760	2e-21	1374 - 1433	97	58 / 60	minus
Harvest21	ABC24953	646	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_13134	646	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_13134 646 Hv_44K_v2
GCCCAAACCCCCACCGTACGCCGCCTTCACATGACCACCCCCGCCGCCGCTGCCGCCGCC
GCCGCTACCGCCGCCTCCACCCGGGCGAACAGCCTCTCCCGTATCTTCTCCTCCTCCTCG
CCAGTCATAAGCCCACCCAAGCGCAGTCCCAAGACCAAACGCGCGCCGACGCCGACGCCG
ACGCCGAAACCGCCCGCCGCCGATGCCGGCTCCATCGCGGACGAGAAGCCCCCGAAGCCC
GTCGGCGCACAGCCCGCCGCCAAAGCTGAGTCCAACGCCAAGCACAAGCTCCCGAAGCCC
CTTGGCATCATCCTCAAGGCCCTCATCCGGCAGCGCGACCCTGATAAGCTGGTCTCTGAC
TTCGTCCAAGCGTCAACCGTGTCGTCGCGCTTCCGCGACCGGCACCGCGTGTTCGAGGTG
GCGGTGAGCCGGCTCAATTCCCTCGGCCGCCAAGACGGCATCGAGGCCATCATCGAAGCG
CAGATGCCCTTCCTCGAGACCTCAGCCGAGGGATTCGCCGCGCGCCTCATCCGCCTCTAC
GGCCGTGCCTCCATGCCATCCCACGCGGCCGCAACCTTCCATAAGCTTNCAGCGCAGCAT
AAATCCACCATGACCTTCAACTCCGTTCTTTCCGCGTACGCCGATG

Homology of Contig U35_13134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g52030.1	471	1e-53
Arabidopsis v10	None