barSeed - Barley Seed Development Database

Probe CUST_32926_PI390587928

Source Contig U35_13139

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32926_PI390587928	Hv_44K_v2	ATGAGATCGTACGTACCTGTCGTACGTGTTGGTGATACCAAGCAATACAAATGTGACCAA	1246	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75227.2	1324	7e-23	1250 - 1309	98	59 / 60	plus	ABC22416 ABC28493
MLOC	MLOC_75227.1	1499	7e-23	1413 - 1472	98	59 / 60	plus	ABC22416 ABC28493
JLOC1	JLOC1_50178.1	1498	4e-23	1413 - 1472	98	59 / 60	plus
Harvest21	ABC22416	1309	3e-25	1247 - 1306	100	60 / 60	plus	ABC22416
Harvest21	ABC28493	1227	1e-23	1167 - 1226	98	59 / 60	plus	ABC28493
Harvest35	U35_13139	1309	3e-25	1247 - 1306	100	60 / 60	plus
Harvest35	U35_26375	1638	1e-23	1578 - 1637	98	59 / 60	plus

Contig Sequence (1309 bp)

>U35_13139 1309 Hv_44K_v2
ACGATCGAGCGACCAATCCAAGCACCTACGCACTCTTCTTTGCTCTCATCCTCTAGCTAG
CTAACTAGCTCTCTTGGATCATCCATGGCGAAGGTGATGAACCTGACCCCGGTGCACGCG
TCGTCGATTCCAGACTCCTTCCTATTGCCGGCAGATCGACTCCACCCAGCCACCACCGAT
GTCTCCCTGCCCATCATCGACATGTCCCGCGGCCGCGACGAGGTCCGCCAAGCCATCCTC
GACTCTGGCAAGGAGTACGGCTTCATCCAGTGGTCAACCATGGCATCTCCGAGCCGATGC
TGCATGAAATGTACGCGGTGTGCCATGAGTTCTTCGATATGCCTGCGGAGGACAAGGCGG
AGTTCTTCTCTGAAGACAGAAGCGAACGCAACAAGCTCTTCTGCGGCTCCGCCTTCGAGA
CCCTAGGCGAGAAGTACTGGATTGACGTCCTCGAACTCCTCTACCCCTTGCCTTCGGGCG
ACACCAAGGACTGGCCCCACAAGCCACAGATGCTCCGGAGGTTGTTGGGAACTACACCTC
GTTGGCAAGAGGCGTGGCCATGGAGATCCTGCGGCTGCTGTGCGAGGGACTGGGACTCCG
GCCAGACTTCTTTGTCGGGGACATCAGCGGAGGCCGCGTGGTCGTCGATATCAACTACTA
CCCGCCTAGCCCGAACCCGAGCAGGACGTTGGGCCTGCCGCCACACTGTGACCGGGACCT
TATGACCGTCCTCCTCCCCGGGGCCGTTCCTGGCCTCGAGATCGCCTACAAGGGCGGCTG
GATCAAGGTCCAGCCCGTGCCAAACTCCTTGGTTATCAACTTCGGCCTACAGCTCGAGGT
CGTGACCAACGGGTATCTGAAGGCTGTCGAGCACCGCGCGGCCACCAACTTTGCCGAGCC
CCGGCTGTCAGTGGCCTCGTTCATTGTGCCGGCGGACGACTGCGTCGTCGGCCCTGCGGA
GGAGTTCGTCAGCGAGGACAACCCGCCACGCTACCGCACCCTAACCGTCGGCGAGTTCAA
GCGCAAGCACAACGTTGTCAATCTGGATTCCTCAATCAATCAGATCATTAACATCAATAA
CAACCAGAAGGGAATATGAAGCAGAAACAGGAGAAAGAGGATTTGCATCACTTCCTCGAT
CGTTCGAGAAAGGCCAAGTGATGCCAAGTTTTATTCCAATGTCTCTCAAGTCGCGACGGG
TGTCAGTTACATCTAGCTGATACGAGATATTTAGTCGTGACATGTGATGAGATCGTACGT
ACCTGTCGTACGTGTTGGTGATACCAAGCAATACAAATGTGACCAATAA

Homology of Contig U35_13139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07410.2	341	2e-82	protein\|oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi1g56240.1	326	5e-88
Arabidopsis v10	None