barSeed - Barley Seed Development Database

Probe CUST_328_PI415269222

Source Contig TA34733_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_328_PI415269222	Hv_44K_v2	TGAAGGTCGCCATGTCCTATTAAATTTAGGCAATTTGTGATATGGACCATAACATTGATT	2652	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.310	4.477	1.314	0.666	0.155	0.206
Raw	1651.023	2216.260	575.453	494.845	37.049	55.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66806.6	2866	7e-23	2694 - 2754	98	60 / 61	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.7	3080	7e-23	2786 - 2846	98	60 / 61	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.4	3995	7e-23	3735 - 3795	98	60 / 61	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.2	3225	7e-23	2930 - 2990	98	60 / 61	plus	ABC07937 ABC07938 ABC12639
MLOC	MLOC_66806.3	3579	7e-23	3260 - 3320	98	60 / 61	plus	ABC07937 ABC07938 ABC12639
JLOC1	JLOC1_44060.2	3246	4e-23	2906 - 2966	98	60 / 61	plus
JLOC1	JLOC1_44060.1	3286	4e-23	2946 - 3006	98	60 / 61	plus
Harvest21	ABC07938	2685	1e-23	2412 - 2472	98	60 / 61	plus	ABC07938
Harvest21	ABC07937	7209	1e-23	7091 - 7151	98	60 / 61	plus	ABC07937
Harvest35	U35_16369	7262	1e-23	6989 - 7049	98	60 / 61	plus

Contig Sequence (2738 bp)

>TA34733_4513 2738 Hv_44K_v2
GCGCAAGACCGTCACACACACACACACACCAGCCCCATCCGATGGCGACGGTCGGGGTGC
TGCTGCTCTGCTTGTGTCTCTGCTTATTCGCGCCCCGCCTGTGCTCGTCCAAGGAGGAGG
GGCCGCTCGCCGCCCGTACCGTGTTAGCCGTCGCGGTGACTATGGAGGGCGCGCTGCGCG
CCGAGGCAGCGACCGGCGGCCGCTCGTCCACCGGCGACGTGCAGAGGCTGGCCGTGTACG
CCAGCCTCGAGACGGACAGCCGCCTGCGGGTGCGCATCACCGACGCCGACCACCCGCGAT
GGGAGGTGCCGCAAGACATCATCCCGCGCCCCGCGCCGGGGGACGTCCTCCACGACGCGC
CGCCCGCCTCCTCGGCGCCACTCCAGGGCCGGGTCCTCTCCCCCGCGGGCTCGGACCTCG
TGCTCACCGTCCACGCCTCCCCGTTCCGCTTCACCGTCTCCCGCCGCTCCACCGGCGACA
CCCTCTTCGACACCGCCCCCGGCCTCGTCTTCAGGGACAAGTACCTGGAGGTGACAACGG
CCCTGCCGGCGGGCCGTGCCTCCCTGTACGGGCTGGGCGAGCACACGAAGAGCTCGTTCC
GGCTGCGGCACAACGACTCCTTCACGCTCTGGAACGCCGACATCGGCGCGTCCTACGTGG
ACGTCAACCTCTACGGCTCGCACCCCTTCTACATGGACGTGCGGCCACCGGGGACCGCGC
ACGGCGTGCTCCTGCTCAGCAGCAACGGCATGGACGTGCTCTACGGCGGGTCCTACGTCA
CCTACAAGGTCATCGGCGGCGTCCTCGACTTCTACTTCTTCGCCGGCCCCAACCCCCTCG
CCGTCGTCGACCAGTACACCCAGCTCATCGGCCGCCCTGCCCCCATGCCGTACTGGTCCT
TCGGGTTCCACCAGTGCCGGTACGGGTACCTGAACGTGTCTGACCTGGAGCGTGTGGTGG
CCGGCTACGCCAAGGCCAGGATCCCGCTGGAGGTGATGTGGACCGATATCGACTACATGG
ACGGGTTCAAGGACTTCACCTTGGACCGTGTCAACTTCACCGCCGCCGAGCTCCGGCCGT
TCGTCGACCGGCTTCACCGGAACGCCCAGAAATACGTCCTCATCCTAGACCCAGGGATCC
GGGTGGACCCCATCGACGCGACGTACGGGACGTTCGTCCGCGGGATGCAGCAGGACATCT
TCCTGAAGCGGAACGGCACAAACTTCGTCGGCAACGTGTGGCCGGGCGACGTCTACTTCC
CGGACTTCATGCACCCAGCCGCCGCCGAGTTCTGGGCGCGGGAGATCTCCCTCTTCCGCC
GGACCATCCCGGTCGACGGGCTGTGGATCGACATGAACGAGATCTCCAACTTCTACAACC
CGGAGCCCATGAACGCGCTCGACGACCCGCCGTACCGGATCAACAACGACGGGACGGGCC
GCCCCATCAACAACAAGACGGTGCGCCCGCTCGCCGTGCACTACGGGGGGGTCACCGAGT
ACGAGGAGCACAACCTGTTCGGCCTCCTCGAGGCCCGCGCCACGGGGCGCGGGGTGCTGA
GGGACACCGGCCGCCGCCCCTTCGTGCTCAGCAGGTCCACCTTCGTGGGCTCGGGGCGCT
ACACCGCTTACTGGACTGGCGACAACGCCGCAACGTGGGGCGACCTGCGCTACTCCATCA
ACACCATGCTCAGCTTCGGCCTCTTCGGCATGCCCATGATCGGCGCCGACATCTGCGGGT
TCAACGGCAACACGACAGAGGAGCTCTGCGGTCGGTGGATCCAGCTCGGAGCCTTCTACC
CCTTCTCGAGGGACCACTCGGCGATCTTCACCGTCCGGCGAGAGTTGTACCTGTGGCCGT
CGGTGGCGGCGTCGGGCAGGAAGGCGCTCGGGCTCCGGTACCAGCTGCTCCCTTACTTCT
ACACGCTCATGTACGAGGCGCACATGACGGGGGCGCCAATCGCGCGGCCGCTCTTCTTCT
CCTACCCGCACGACGTCGCCACGTACGGCGTGGACAGACAGTTCCTGCTCGGCCGCGGCG
TCCTCGTTTCGCCGGTGCTCGAGCCGGGCCCGACAACCGTCGACGCCTACTTCCCGGCGG
GCCGGTGGTACAGACTCTACGACTACTCCCTCGCCGTCGCCACGCGGACCGGCAAGCACG
TCAGGCTGCCGGCGCCGGCCGACACGGTGAACGTGCACCTGACCGGCGGCACCATCCTCC
CGCTGCAGCAGAGCGCGCTGACTACGTCGCGCGCGCGCCGGACCGCGTTCCACCTCCTGG
TCGCGCTCGCGGAGGACGGGACGGCCAGCGGCTACCTTTTCCTGGACGACGGCGACTCGC
CGGAGTATGGCAGGAGAAGCGATTGGAGCATGGTAAGGTTCAACTACAAGATACCAAACA
ACAAAGGGGCCATCAAGGTGAAGTCGGAGGTGGTGCACAACTCGTACGCACAGAGCAGGA
CACTGGTCATAAGCAAGGTGGTGCTCATGGGGCACCGGTCGCCGGCGGCGCCGAAGAAGC
TCACCGTCCACGTCAACAGCGCGGAGGTGGAGGCGAGCTCGTCAGCCGGCACACGGTACC
AGAACGCAGGAGGACTCGGCGGCGTCGCTCACATCGGCGGTCTGTCGCTGGTCGTCGGGG
AGGAGTTCGAACTGAAGGTCGCCATGTCCTATTAAATTTAGGCAATTTGTGATATGGACC
ATAACATTGATTGAATAAAGGCGAGAAATTAAAGCCCA

Homology of Contig TA34733_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g46284.2	886	protein\|glycosyl hydrolase, family 31, putative, expressed
Brachypodium v1_2	Bradi1g32650.1	897
Arabidopsis v10	AT5G11720.1	902	Glycosyl hydrolases family 31 protein \| chr5:3776840-3780025 FORWARD LENGTH=902