barSeed - Barley Seed Development Database

Probe CUST_32870_PI390587928

Source Contig U35_37116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32870_PI390587928	Hv_44K_v2	AAGGAAGTTTCTGCTGGTAGAACTAGACCAGCTGAGTTTGCTGGAGAGAATGATGCTGAT	418	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65169.2	4468	2e-24	3011 - 3070	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
MLOC	MLOC_65169.1	4863	2e-24	2913 - 2972	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
JLOC1	JLOC1_42866.1	4796	8e-25	2906 - 2965	100	60 / 60	plus
Harvest21	ABC32761	586	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_37116	586	3e-25	419 - 478	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_37116 586 Hv_44K_v2
TGAAAGCATTCCGAAGGAACAAGCACAATCTTCTCGTGGTTTATTGGCGAATGGAGTTTC
AGAAGATGCTCACAATGGTTTCCATGATGCTGATCGAACTGTCCGCAGAGGTGAGGGGCC
ATCTAACACTTCATTGCATCAGACTGAACAGAATCAGCGGAGAACAAATATGGAGCTTAC
ATCAGGTACTAATTCTTCTAGAAGTAATTTCTCCGGAAATGAGGCTGTTGTTGAAGCTAT
GGGTGGCAATGAAACAATTCCATCTATAGGGAGAGGAGAAGCTGGGAGGCCAGGACCTAT
TCCTCAGAAGAATCCAAAGGTTGAAAGAGAAGAGGGAGAATTATCTCCTAATGGGGATTT
TGAAGAGGAGCTTTATCGGCCTCTAGGAAATGCAGCTGTAGGTGGAGCTTCGAAGCCGAA
GGAAGTTTCTGCTGGTAGAACTAGACCAGCTGAGTTTGCTGGAGAGAATGATGCTGATGC
GGACGACGAAGGTGAAGAAAGCGCCCAGAGATCTACAGAAGACAGTGAAAATGCATCTGA
GGCTGGAGAGGATGCTTCTGGCAGCGAATCTGGTGATGGTGGGGAG

Homology of Contig U35_37116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g40052.3	1239	3e-65
Arabidopsis v10	None