barSeed - Barley Seed Development Database

Probe CUST_32838_PI390587928

Source Contig U35_49103

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32838_PI390587928	Hv_44K_v2	AGAAGCAAAGAAATTTGCATACCCGACTGGTGTTAAGGCTTGTGTTGCATATGGTGGAGC	46	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.456	1.114	1.435	1.062	0.832	0.659
Raw	275.288	279.028	368.208	387.298	116.268	102.705

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248344.1	2552	7e-23	1044 - 1103	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.8	1123	7e-23	875 - 934	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.1	1163	7e-23	915 - 974	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.2	1163	7e-23	915 - 974	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.6	1479	7e-23	1202 - 1261	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.7	1536	7e-23	1202 - 1261	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.3	1330	7e-23	1079 - 1138	98	59 / 60	plus	ABC08634
MLOC	MLOC_5110.4	1330	7e-23	1079 - 1138	98	59 / 60	plus	ABC08634
JLOC1	JLOC1_3259.1	1614	4e-23	938 - 997	98	59 / 60	plus
Harvest21	ABC08634	1542	1e-23	71 - 130	98	59 / 60	plus	ABC08634
Harvest35	U35_49103	366	3e-25	47 - 106	100	60 / 60	minus
Harvest35	U35_3839	1542	1e-23	71 - 130	98	59 / 60	plus

Contig Sequence (366 bp)

>U35_49103 366 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCAGTTCCCTCAACTGCTGATGAATGGGGGCTCCACCATATGC
AACACAAGCCTTAACACCAGTCGGGTATGCAAATTTCTTTGCTTCTTAATGAATTTGAAC
TGATAGCTCACGAGTAGGAGATAATATCAAAGCAGGAGGAAAGGCAGCCCTAGCTCTGGG
CCTTATGGGGGGCTTTGTCTTTAGGACCCCACTGATGATCGGAAAACAAAAAGCAGCAGT
CTTCCCAAATCCAGTCTGAGCACAGGCCATCAAATCCCTACCTCCAATGACAATCGGAAG
GGCATGGCGCTGCACAGGTGTAGGCCTAACATACTTGCACCTCCGTATATTCTCATTCAG
GGCATC

Homology of Contig U35_49103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g04860.2	615	1e-54
Arabidopsis v10	None