barSeed - Barley Seed Development Database

Probe CUST_32757_PI390587928

Source Contig U35_31238

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32757_PI390587928	Hv_44K_v2	GTAGTGGAGTTGAAGGTTGAATCATTTTATGTGATGCATGTTTGTAAAGTATGTGCCATG	332	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77704.4	1156	7e-23	31 - 90	98	59 / 60	minus	ABC13958
MLOC	MLOC_77704.1	2963	7e-23	73 - 132	98	59 / 60	minus	ABC13958
MLOC	MLOC_77704.3	3387	7e-23	47 - 106	98	59 / 60	minus	ABC13958
MLOC	MLOC_77704.2	1262	7e-23	55 - 114	98	59 / 60	minus	ABC13958
JLOC1	JLOC1_51809.8	2867	4e-23	2755 - 2814	98	59 / 60	plus
JLOC1	JLOC1_51809.7	1239	4e-23	1127 - 1186	98	59 / 60	plus
JLOC1	JLOC1_51809.6	1158	4e-23	1046 - 1105	98	59 / 60	plus
JLOC1	JLOC1_51809.5	2943	4e-23	2831 - 2890	98	59 / 60	plus
JLOC1	JLOC1_51809.4	3388	4e-23	3276 - 3335	98	59 / 60	plus
JLOC1	JLOC1_51809.3	1131	4e-23	1019 - 1078	98	59 / 60	plus
JLOC1	JLOC1_51809.2	1167	4e-23	1055 - 1114	98	59 / 60	plus
JLOC1	JLOC1_51809.1	2091	4e-23	1979 - 2038	98	59 / 60	plus
Harvest21	ABC31396	427	3e-25	333 - 392	100	60 / 60	plus
Harvest21	ABC13958	1208	1e-23	1077 - 1136	98	59 / 60	plus	ABC13958
Harvest35	U35_31238	427	3e-25	333 - 392	100	60 / 60	plus
Harvest35	U35_19694	1208	1e-23	1077 - 1136	98	59 / 60	plus

Contig Sequence (427 bp)

>U35_31238 427 Hv_44K_v2
AGAGTATAGCGATATTTATTGCATCAGTCTGTGAATCAGACCGTATTGAATAGTATTTAA
CCACATGAAATGACATTTCTTTATTTGATAATAGGCATGTAAACCACAACCTTCTGGTCT
GTATGTTCTTCTCATTTGTGATCCTTTTAACGCGAGGAAGTTCCTCAATCCAGAATTGGC
TACTCACAAGAAGTGGAAAGTGGAAGACAGACGATGCTATGGTTTCTCAATTTGCTGTTA
CATGTGAACAATTTAATTTTATGTTCTTTAATGTGTTCCATTGAAGCCACAGTGGTTGTA
TTGGTCATATAGTACCAACACTTGTTGGATTTGTAGTGGAGTTGAAGGTTGAATCATTTT
ATGTGATGCATGTTTGTAAAGTATGTGCCATGATGTGCTTAAATGAACGGAACTACTTAT
CATAATG

Homology of Contig U35_31238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None