barSeed - Barley Seed Development Database

Probe CUST_32752_PI390587928

Source Contig U35_43213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32752_PI390587928	Hv_44K_v2	TTTTATCATCGATTAGAACCTGGCATGAATCATGGAGTTCGGGGTCATCTGATGATTCTC	506	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365159	2139	2e-24	857 - 916	100	60 / 60	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.6	1211	2e-24	226 - 285	100	60 / 60	minus	ABC20479 ABC21055
MLOC	MLOC_44794.5	1017	2e-24	342 - 401	100	60 / 60	minus	ABC20479 ABC21055
MLOC	MLOC_44794.2	2169	2e-24	1270 - 1329	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.3	1894	2e-24	1125 - 1184	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.4	2103	2e-24	1125 - 1184	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
JLOC1	JLOC1_29059.3	1944	8e-25	661 - 720	100	60 / 60	plus
JLOC1	JLOC1_29059.2	1912	8e-25	629 - 688	100	60 / 60	plus
JLOC1	JLOC1_29059.1	1924	8e-25	641 - 700	100	60 / 60	plus
Harvest21	ABC39631	585	3e-25	507 - 566	100	60 / 60	plus
Harvest35	U35_43213	585	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (585 bp)

>U35_43213 585 Hv_44K_v2
CGATTCCTGGCTCGGCCGTTACCGCACTGTAGTATGCGCCTCCCTACTCTATATCCTGGG
CCTGGGCATGCTCACACTATCATCAATTCTTGCGCCACAACAACCAGCACAATTCAGAGA
CCACGTCGATTCCTCTGTATCCTCGACTTCGATGATTCATTTAGCTTTCTTCTACGTGTC
CCTGTATGTTGTGGCCTTTGCTCAAGGTGGTCACAAACCTTGTGTGCAAGCATTTGGGGC
AGACCAATTTGATGAGAACGATCCTGAAGAATCTGCCTCGAGAAGTTCCTTCTTCAATTG
GTGGTATTTTGGGACGTATGGAGGCAGTGTTGTTACAGTTTCAATCTTGAATTACATTCA
AGATAACATAAGCTGGCAATTTGGGTTTGGAATCCCTTGCATCGTTATGTCTCTTTCTCT
TGCAGTTTTCTGGCTTGGGACCAGGACTTATCGCTTTTATCCTGTAAGAAGTGATGGAAG
CCTAATTGGACAGGTTGTCAAACACATTTTATCATCGATTAGAACCTGGCATGAATCATG
GAGTTCGGGGTCATCTGATGATTCTCACCGCATGCCAACACCATC

Homology of Contig U35_43213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65200.2	321	2e-85	protein\|proton-dependent oligopeptide transport, putative, expressed
Brachypodium v1_2	Bradi2g56387.2	551	3e-99
Arabidopsis v10	None